mRNA_H-elongata_contig15979.3849.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: D8LI35_ECTSI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI35_ECTSI) HSP 1 Score: 590 bits (1520), Expect = 7.380e-203 Identity = 297/415 (71.57%), Postives = 336/415 (80.96%), Query Frame = 1
Query: 1 VVNHLLGRDPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKTFVTGCYDGFLRVYGPDCKEVSTAKAHRSPVTGLCAVPSA-----GGINGAGLLSGSKDMTGRMWRIHGSGSNASLEAAAVLRGHDSSISAVHASES---------MAYTGDWGGHVCMWDVSCLGAGADRGEVSNKGTKRRKT--GSNETEAVALLEPSPVARFRGHAQAVTGLASPVG-GQPQ-------QQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTRMKGETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGWQDGKIISGGADGAVKTFVVPE 1173
VVNHLLGRDPPTPFD+LVMGRFLRSSLR+VM+RHALSGEA+LEVEY+PALRQPTEAEHA++PDWVSAVAG G G++TFVTGCYDG LRVYGP CK S KAH++PVT LCAVPS GG + AG LSGSKDMT R+WR GSG N+SLEAAA+LRGH +SISA HA+ S AYTGDW GHVC+WDV+CL G G+ + +GTKRRKT G+ + E +P+A FR HAQAVTGLA P G G+PQ LYSASLDRAVKTWD ERQDC+HTLN P+A+TCLGCS SGRMLATGHPDARVRIWDTR +GETLTRASLSSH QW++GV WAP SETM+LSCSHDG+VKLWDIRST+PLHSA+AH GKA CCGWQDGKI+SGG DGAVKT+VVPE
Sbjct: 48 VVNHLLGRDPPTPFDMLVMGRFLRSSLRSVMQRHALSGEAVLEVEYLPALRQPTEAEHADQPDWVSAVAGAGAGLETFVTGCYDGCLRVYGPGCKVTSLEKAHQAPVTALCAVPSLAGGRPGGAHAAGFLSGSKDMTARLWRRAGSGGNSSLEAAAILRGHANSISAAHAAASGSGDSGGAPRAYTGDWSGHVCLWDVACLEGGHADGDDA-QGTKRRKTDTGAAAXXXXXVTELTPLASFRAHAQAVTGLAGPGGVGRPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTGVKWAPGSETMVLSCSHDGSVKLWDIRSTLPLHSAQAHRGKALCCGWQDGKIVSGGEDGAVKTYVVPE 461
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A6H5KQ32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ32_9PHAE) HSP 1 Score: 301 bits (772), Expect = 2.250e-94 Identity = 147/202 (72.77%), Postives = 164/202 (81.19%), Query Frame = 1
Query: 598 GTKRRKT--GSNETEAVALLEPSPVARFRGHAQAVTGLASPVG-GQPQ-------QQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTRMKGETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGWQDGKIISGGADGAVKTFVVPE 1173
GTKRRKT G+ A+ E +P+A FR H+QAVTGL P G G PQ LYSASLDRAVKTWD ERQDC+HTLN P+A+TCLGCS SGRMLATGHPDARVRIWDTR +GETLTRASLSSH QW++ V WAP SETM+LSC HDGAVKLWDIRST+PLHSA+AH+GKA CCGWQDGKI+SGG DGAVKT+VVPE
Sbjct: 10 GTKRRKTDTGAAAAAVAAVTELTPLAGFRAHSQAVTGLVGPGGVGGPQTAAVVVPSSTLYSASLDRAVKTWDAERQDCLHTLNAPKAVTCLGCSDSGRMLATGHPDARVRIWDTRTQGETLTRASLSSHKQWVTDVKWAPGSETMVLSCGHDGAVKLWDIRSTLPLHSAQAHQGKALCCGWQDGKIVSGGEDGAVKTYVVPE 211
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A836CE58_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE58_9STRA) HSP 1 Score: 251 bits (641), Expect = 1.930e-71 Identity = 166/446 (37.22%), Postives = 220/446 (49.33%), Query Frame = 1
Query: 1 VVNHLLGRDP-------------------PTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKT---------FVTGCYDGFLRVYGPD--CKEVSTAKAHRSPVTGLCAVPSAGGINGAGLLSGSKDMTGRMWRI------------HGSGSNASLEAAAVLRGHDSSISAVHASES----MAYTGDWGGHVCMWDVSCL--GAGADRGEVSNKGTKRRKTGSNETEAVALLEPSPVARFRGHAQAVTG--LASPVGGQPQQQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGC------SSSGRMLATGHPDARVRIWDTRMK-GETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGWQDGKIISGGADGAVKTFVV 1167
VVNHLLG + P PFD+L+ GRFLR+SL M+ HA+SGE +LE+EY+PALRQPTE +PDWVSA+A C T + CYDG LR+YG +A+ P+T L A D R W + E AAVL GH +S++AV S + A +GDW G +C+WD++ AGAD E G KRRK + E +AV ++E P A F+ H+QAVTG LA P LY+ S D ++K WD +RQDCV T+ +A+ C+ +++ +LATGHPD R+R+WD R K GETLT A+L++ W+ GV WA S S L + AH+G A C W G + SGG DG V+TF V
Sbjct: 62 VVNHLLGLNADTSAAAAAPHDAAPPSSKAPIPFDILIDGRFLRTSLARYMRAHAVSGETVLELEYLPALRQPTEESADTQPDWVSALAACAGAAGTGGERVAGPFLASACYDGCLRLYGASGGLDIAHSARVSAQPLTALAAXXXXXXXX--------XDDAERCWLLAXXXXXXXXXXXXXXXXXXXXEQAAVLSGHQNSVAAVSFSPAGGTHTAASGDWDGRMCLWDLAAAQGAAGADA-EAGGPGVKRRKRAAGEADAV-VVELEPTAVFKAHSQAVTGVYLAGP-------DTLYTGSWDHSLKAWDAQRQDCVRTMACAKAVACMDAQGGDDAAAASGLLATGHPDGRIRVWDVRTKAGETLTLATLAARGGWVYGVKWAHGSAYNXXXXXXXXXXXXXXXXSGAALRTLPAHKGAALCVAWHAGGVASGGDDGVVRTFKV 490
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A2D4C6Q8_PYTIN (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6Q8_PYTIN) HSP 1 Score: 242 bits (618), Expect = 3.590e-67 Identity = 149/399 (37.34%), Postives = 220/399 (55.14%), Query Frame = 1
Query: 1 VVNHLLGRDPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKTFVTGCYDGFLRVYGPDCKEVSTAKAHRSPVTGLCAVPSAGGINGAGLLSGSKDMTGRMWRIHGSGSNASLEAAAVLRGHDSSISAV--HASESMAYTGDWGGHVCMWDVSCLGAGADRGEVSN-KGTKRRKTGSNETEAVALLEPSPVARFRGHAQAVTGLASPVGGQPQQQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTR--MKGETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGWQDG-----KIISGGADGAVKTFVV 1167
VVNHLL P PFD L+ G FLR+SL M+RHALS E++L +EY+ AL +P++ PDWVSAV+ V VTGCYDG +RVY + +++ KAH+ V + + + + S KD G++WR + + L A A L GH +S+ A+ A A TG W V +W V +G++ EVS+ + K++K+ + + V+ + GH VTG+A Q + SA DR+++ WD C T+ RAIT + +++G M+ T HPD VR+WD R GE+L + + SH +W++ V+W P +E + LS +DGAVK+WD+RST+PLH+ AH+GKA W+ +SGG D +K F V
Sbjct: 208 VVNHLLNTAEPRPFDFLIDGNFLRTSLEKYMQRHALSEESMLTLEYVEALPEPSQKNETNHPDWVSAVSAAQDIV---VTGCYDGQVRVYDLEGNCLASVKAHQGAVKAVSVQLAKQNV--FLITSSGKDQMGQVWRFNAA--TRQLSAVASLTGHLNSVDAIALDARAERALTGSWDNTVRVWMVP---SGSEAVEVSDAQPKKKQKSDAKSSGVVSFSQLEAEIVLVGHTSYVTGVAFHPTDAHQ---VVSAGSDRSIRLWDLTTHQCKQTMKGNRAITSVSVNANG-MVVTAHPDHCVRLWDPRATQNGESLVQRTFQSHREWVNAVSWHPTNEHLFLSGGYDGAVKVWDVRSTIPLHTVAAHDGKALDVAWRPVDEPAVSFVSGGEDKQLKLFSV 592
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A8K1CSP5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSP5_PYTOL) HSP 1 Score: 236 bits (602), Expect = 1.140e-66 Identity = 149/400 (37.25%), Postives = 211/400 (52.75%), Query Frame = 1
Query: 1 VVNHLLGRDPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKTFVTGCYDGFLRVYGPDCKEVSTAKAHRSPVTGLCAVPSAGGINGAG--LLSGSKDMTGRMWRIHGSGSNASLEAAAVLRGHDSSISAV--HASESMAYTGDWGGHVCMWDVSCLGAGADRGEVSNKGTKRRKTGSNETEAVALLEPSPVARFRGHAQAVTGLASPVGGQPQQQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTR--MKGETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGWQDGK-----IISGGADGAVKTFVV 1167
VVNHLL P PFD L+ G FLR+SL M+R+A+S E+LL +EY+ AL +P + PDWVSAV+ K V VTGCYDG +RVY + +++ KAH+ V + S I G + S KD G++WR + S L A A L GH +S+ + H+ A TG W V +W + + E K K++K + + V+ + GH VTG+A Q+ + S + DR V+ WD C TL RAIT + +++G +L T HPD VR+WD R GE + + + SH +W+S V W +E + SC +DGAVK+WD+RSTVP+H+ AHEGKA W+ +SGG D +K + V
Sbjct: 40 VVNHLLNTTTPRPFDFLIDGVFLRTSLDKYMQRNAVSEESLLILEYVEALPEPEQKNETNHPDWVSAVS-VAKDV--IVTGCYDGQVRVYDLKGECLASVKAHQGAVKAV----SVQFIQGKEYRITSSGKDQMGQVWRFNASSKQ--LSAVAALTGHLNSVDTIQLHSGGRQALTGSWDNTVRVWHLPEDDNAGEDDEAQPK--KKQKNSAKSSGTVSFRQVEAEIILTGHTSYVTGVAF---HPTQEDYVVSGASDRTVRFWDLTTHLCKQTLTGNRAITDISVNANGLVL-TAHPDNCVRLWDPRASQSGENIVQKTFQSHTEWVSAVEWHQQNENLFASCGYDGAVKVWDVRSTVPIHTIAAHEGKALDVAWRPVSEPAVAFVSGGEDKQLKVYSV 424
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A5D6YFB0_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFB0_9STRA) HSP 1 Score: 227 bits (579), Expect = 2.830e-63 Identity = 147/400 (36.75%), Postives = 204/400 (51.00%), Query Frame = 1
Query: 1 VVNHLLGRDPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKTFVTGCYDGFLRVYGPDCKEVSTAKAHRSPVTGLCAVPSAGGINGAGLLSGSKDMTGRMWRIHGSGSNASLEAAAVLRGHDSSISAV--HASESMAYTGDWGGHVCMWDV-SCLGAGADRGEVSNKGTKRRKTGSNETEAVALLEPSPVARFRGHAQAVTGLASPVGGQPQQQ-LLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTRMK--GETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGW--QDGKII---SGGADGAVKTFVV 1167
VVNHLL P PFD LV G+FLR+SL + +H S EALL +EY+ AL +P + A PDWVSAVA G+ VTGCYDG +RV+ + V+ KAH V + + + KD TG++W + + A A GH +S+ AV + A TG W V +WD + + A ++ AV+ + GH VTG+A PQ + L+ S + DR+V+ WD C TL RAIT + ++ G +L+ HPD VR+WD R GE+L + + SSH +W+S V W P T+ S S+DG+VK+WD RS+VPLH+ AH+GKA W +D + SGG D +K F V
Sbjct: 43 VVNHLLNLPVPRPFDFLVDGQFLRTSLEKYLLQHGASEEALLTLEYVEALPEPEKQREANHPDWVSAVAAAHTGL--VVTGCYDGHVRVHDAAGECVAALKAHHGAVKAVSVQRVPEKKREFVIATSGKDQTGQLWLFDAAKKR--ISALAAFTGHLNSVDAVALRVTGEQALTGSWDNTVRVWDTKAAVSAAXXXXXXXXXXXXXXXXXASGASAVSFRQLEAEVVLVGHTSFVTGVAF----HPQHEHLVVSGASDRSVRVWDLTTHSCAQTLTGNRAITDISVNADGLVLSA-HPDHCVRLWDPRASQAGESLVQRTFSSHKEWVSAVEWHPTRATLFASASYDGSVKVWDARSSVPLHTLAAHDGKALDVAWRLEDAAHVAFASGGEDKQLKFFSV 433
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A7S0L654_9EUKA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L654_9EUKA) HSP 1 Score: 227 bits (579), Expect = 3.310e-63 Identity = 141/404 (34.90%), Postives = 203/404 (50.25%), Query Frame = 1
Query: 1 VVNHLLGRDPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGC------------GKGVKTFVTGCYDGFLRVYGPDCKEVSTAKAHRSPVTGLCAVPSAGGINGAGL-LSGSKDMTGRMWRIHGSGSNA-SLEAAAVLRGHDSSISAVHASES--MAYTGDWGGHVCMW---DVSCLGAGADRGEVSNKGTKRRKTGSNETEAVALLEPSPVARFRGHAQAVTGLASPVGGQPQQQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTRMKGETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGWQDG-KIISGGADGAV 1152
V+NHLL + PFD +V G LR SL M RH L+GE + +EY+ L P A + PDWVS+VA + V ++GCYDG R +GP + V T + H S V +C + G GL L+ SKD T R W + + + + GH S+ A A+ + +G W G +C+W D S A D + KR +T A+ E P+++ + H++ ++GL LLYSAS D V+ WD + + + +A+ CL S + + TGH D +R+WD R +G L+ +H W+SGVAWAP +L S SHDG+V+LWD RSTVPLH AH+ K+ C W +++SGGADG +
Sbjct: 54 VINHLLSTETTRPFDFVVNGELLRGSLEKAMTRHGLTGEQAVMIEYVELLAPPNLACDSNHPDWVSSVASARTHAMLSGDPTASERVPLVLSGCYDGSGRAWGPGGELVCTMQGHTSGVKAVCWL-------GRGLALTASKDRTLRAWSFQSAAKEQLTAKCEQLYVGHTDSVEAACANPAGDRFCSGGWDGQLCIWRAPDTSVSTAEVDHEPAA----KRART-------PAVSEAHPLSKMQAHSECLSGLCWRTAA-----LLYSASWDGTVREWDVNAESSTSAVTSQKAVLCLDVSLASASIVTGHSDHCLRVWDVRQRG--LSARLTLAHKSWVSGVAWAPHQPLLLASASHDGSVRLWDTRSTVPLHELPAHKPKSLCVSWDGSDRLVSGGADGVL 432
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A1V9ZYX7_9STRA (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYX7_9STRA) HSP 1 Score: 217 bits (552), Expect = 1.030e-59 Identity = 138/394 (35.03%), Postives = 201/394 (51.02%), Query Frame = 1
Query: 1 VVNHLLGRDPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKTFVTGCYDGFLRVYGPDCKEVSTAKAHRSPVTGLCAVPSAGGINGAGLLSGSKDMTGRMWRIHGSGSNASLEAAAVLRGHDSSISAV--HASESMAYTGDWGGHVCMWDVSCLGAGADRGEVSNKGTKRRKTGSNETEAVALLEPSPVARFRGHAQAVTGLASPVGGQPQQQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTRMK--GETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGW---QDGKIISGGADGAVKTF 1161
VVNHLL P PFD L+ G FLR++L + +H L+ EA+LE+EY+ A +P PDW+SAVA K V VTGCYDG LRV+ + V+ KAH S + + ++G ++SGSKD + + W+ +N + AA V H +S+ AV A A +G W V +W ++ E K K++KT ++ E V GH V G+ + YSAS+DR++K WD + C T+ +I+ L S SG +L+ HPD +R+WD R G L + + SH W+S V W+ ++E +S S+DG VK+WD RS++PL + AH GKA W +SGG D +K +
Sbjct: 40 VVNHLLNTSEPKPFDFLIDGNFLRTTLEKYVLQHNLNEEAVLELEYLEAQLEPEAKSSQNHPDWISAVASYDKYV---VTGCYDGILRVFLTSGELVAQIKAHDSVIKAVT-------MHGDVIVSGSKDQSFKSWKF----TNNKIVAATVGSSHLNSVDAVAIDAQGQHALSGAWDNTVRLWALNA--------EPEEKQVKKQKTSGGGLASLVQQEAKLV--LAGHTSNVVGVTFDPSSS---NIAYSASMDRSIKIWDLALETCKQTMTGSSSISDLSVSKSGLVLSA-HPDTCIRLWDPRAANTGTALVQKTFQSHKLWVSAVEWSTETEHQFVSSSYDGTVKMWDARSSIPLFTLEAHTGKALDVAWVHQSKPAFVSGGEDCQLKFY 405
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: A0A1Y1IFE5_KLENI (Ribosome biogenesis protein WDR12 homolog n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFE5_KLENI) HSP 1 Score: 216 bits (550), Expect = 3.090e-59 Identity = 138/395 (34.94%), Postives = 204/395 (51.65%), Query Frame = 1
Query: 1 VVNHLLGRDPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKTFVTGCYDGFLRVYGPDCKEVSTAKAHRSPVTGLCAVPSAGGINGAGLLSGSKDMTGRMWRIHGSGSNASLEAAAVLRGHDSSISAVHASES--MAYTGDWGGHVCMWDVSCLGAGADRGEVSNKGTKRRKTGSNETEAVALLEPSPVAR--FRGHAQAVTGLASPVGGQPQQQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSG-RMLATGHPDARVRIWDTRMKGETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGW-QDGKIISGGADGAVKTFVV 1167
V+N LL + PFD LV G LR+SL +++ LS E L +EY+PA+ P DWVSA+ G V V+GCYDG R++ + +++ + H +T +P A G +++ SKD T R+W++ G+ S S + VLRGH ++I +V AS S +G W + +W VS A+ G + K + +G+ A A + + AR GH+Q V+ + + ++SAS D +V+TWD + T+ + I L G +LATG D +RIWD+R T + L SH WI+ V W LLS SHDG VK+WD+RS VPLH+ +AH KA C W Q+ I+SGGAD ++ +
Sbjct: 44 VINSLLSTEKLRPFDFLVGGELLRTSLESLLVSKKLSAETTLTIEYIPAVGLPKPVSSHVHDDWVSAINGTSPDV--LVSGCYDGVARLWSSSGEALTSLQGHSDAITSTAVIPRASGS--CDVITASKDRTLRVWQVKGTDSQPSGDLHQVLRGHSAAIQSVVASPSGNEVASGSWDTTIKVWSVS---RDAEDGGSAPKRQRVEDSGA----APAGEQEAREARVTLEGHSQCVSAV-----DWSRADTIHSASWDHSVRTWDVQAAVNTSTITGSKVILALSVGGEGGALLATGGADPAIRIWDSRDSSSTGSAIQLLSHKGWITAVKWHKTRTHQLLSTSHDGTVKMWDVRSKVPLHTVQAHTVKALCVDWFQEATIVSGGADNQLRFHAL 422
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Match: D0NDP0_PHYIT (Ribosome biogenesis protein WDR12 homolog n=12 Tax=Phytophthora TaxID=4783 RepID=D0NDP0_PHYIT) HSP 1 Score: 214 bits (546), Expect = 1.200e-58 Identity = 144/401 (35.91%), Postives = 208/401 (51.87%), Query Frame = 1
Query: 1 VVNHLLGR-DPPTPFDLLVMGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVAGCGKGVKTFVTGCYDGFLRVYGP--DCKEVSTAKAHRSPVTGLCAVPSAGGINGAGLLSGSKDMTGRMWRIHGSGSNASLEAAAVLRGHDSSISAV--HASESMAYTGDWGGHVCMWDVSCLGAGADRGEVSNKGTKRRKTGSNETEAVALLEPSPVARFRGHAQAVTGLA-SPVGGQPQQQLLYSASLDRAVKTWDTERQDCVHTLNTPRAITCLGCSSSGRMLATGHPDARVRIWDTRMK--GETLTRASLSSHVQWISGVAWAPDSETMLLSCSHDGAVKLWDIRSTVPLHSARAHEGKAFCCGWQDGK----IISGGADGAVKTFVV 1167
VVNHLL D P PFD L+ G FLRSSL ++ + +S EALL +EY+ AL +P + ++ PDWVSAVA + VTGCYDG LRVY DCK ++ KAH+ V + S G + S KD ++WR S L A L GH +S+ AV HAS + TG W V +W G++ K +KT ++ AV+ + GH VTG+A P + + ++ SA DR+V+ WD Q C L RA++ L +++G +L T HP R + GE++ + + SH +W+S V+W P +E + +S +DG K+WD RST+PLH+ AHEGK W++ + ++GG D + F V
Sbjct: 40 VVNHLLATGDSPRPFDFLIDGLFLRSSLDKYLQTNDVSEEALLTLEYVEALPEPQKQNGSDHPDWVSAVASLDD--ELVVTGCYDGVLRVYDAQGDCK--ASVKAHQGAVKAVSVSSSKSGE--FVVASSGKDQLAQLWRYTVKSSK--LSPLAALTGHLNSVDAVQLHASGNRVVTGSWDNTVRVWQTP---NGSEDSSEQRSSKKHKKT-EDDAGAVSFRQLEAEIVLVGHTSYVTGVAFRPKTSEHDEDVVVSAGSDRSVRLWDLVTQSCSQALAGNRAVSDLTVNATGLIL-TAHPXXXXXXXXPRAQQSGESIVQRTFRSHKEWVSSVSWHPSNEHLFVSGGYDGTAKVWDARSTIPLHTVSAHEGKVLDLSWRNQEESVAFVTGGDDKKLNFFNV 427 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15979.3849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15979.3849.1 >prot_H-elongata_contig15979.3849.1 ID=prot_H-elongata_contig15979.3849.1|Name=mRNA_H-elongata_contig15979.3849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=383bp MGRFLRSSLRAVMKRHALSGEALLEVEYMPALRQPTEAEHAEEPDWVSAVback to top mRNA from alignment at H-elongata_contig15979:2..6694+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15979.3849.1 ID=mRNA_H-elongata_contig15979.3849.1|Name=mRNA_H-elongata_contig15979.3849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6693bp|location=Sequence derived from alignment at H-elongata_contig15979:2..6694+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15979:2..6694+ >mRNA_H-elongata_contig15979.3849.1 ID=mRNA_H-elongata_contig15979.3849.1|Name=mRNA_H-elongata_contig15979.3849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2298bp|location=Sequence derived from alignment at H-elongata_contig15979:2..6694+ (Himanthalia elongata Himel1 dioecious)back to top |