prot_H-elongata_contig15959.3842.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig15959.3842.1
Unique Nameprot_H-elongata_contig15959.3842.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length265
Homology
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BLAST of mRNA_H-elongata_contig15959.3842.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.500e-59
Identity = 124/230 (53.91%), Postives = 159/230 (69.13%), Query Frame = 0 
Query:   44 KQQPSKQHLQALS-FHTTAVVLAR--KKEKSPKSSFNVI------GNLDKESESAVPKPHISMTESDKPDMMDLVDLIMAGTSYQDAVKGTEFDTLDEETTQKFEESIRRFTAQREYRLEEYLQSKGEVELLNNVRNIKSKSNTNVKESEXXXXXXXXXAMARKSGEGVQMAQGKWAEILVHSDRVTKTVKGGMEVQYRALVTVGNLHGVGGFAIGKAANPAEAITEASR 264
            + +P++ H QA +  H++ ++L R  K+ +S  SS          G+ D+   ++V    +SMT+ DKPD++DL DLIM+GTSY++AVKGTEFD LD+ET+++FEES RR TA RE RLEEYL+  GE +LL+ VR I         E E            +K  + V+MAQG+WAEILVH+DRVTKTVKGGME+QYRALVTVGNLHGVGGFAIGKA  PA AITEASR
Sbjct:   39 RARPAQHHRQAAAALHSSTMLLDRGDKRGESHNSSVXXXXXXXXXGSADESKPASVRS--VSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYG-------EPETSEQTDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASR 259
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BLAST of mRNA_H-elongata_contig15959.3842.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.230e-57
Identity = 109/170 (64.12%), Postives = 131/170 (77.06%), Query Frame = 0 
Query:   95 ISMTESDKPDMMDLVDLIMAGTSYQDAVKGTEFDTLDEETTQKFEESIRRFTAQREYRLEEYLQSKGEVELLNNVRNIKSKSNTNVKESEXXXXXXXXXAMARKSGEGVQMAQGKWAEILVHSDRVTKTVKGGMEVQYRALVTVGNLHGVGGFAIGKAANPAEAITEASR 264
            +SMT+ DKPD++DL DLIM+GTSY++AVKGTEFD LD+ET+++FEES RR TA RE RLEEYL+  GE +LL+ VR I  +  T+ +                K  + V+MAQG+WAEILVH+DRVTKTVKGGME+QYRALVTVGNLHGVGGFAIGKA  PA AITEASR
Sbjct:   38 VSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQTD---------GPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASR 198
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BLAST of mRNA_H-elongata_contig15959.3842.1 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.730e-25
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0 
Query:  205 MAQGKWAEILVHSDRVTKTVKGGMEVQYRALVTVGNLHGVGGFAIGKAANPAEAITEASR 264
            MAQG+WAEILVH+DRVTKTVKGGME+QYRALVTVGNLHGVGGFAIGKA  PA AITEASR
Sbjct:    1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASR 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15959.3842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTY3_ECTSI4.500e-5953.91S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
D7FTY0_ECTSI1.230e-5764.12S5 DRBM domain-containing protein n=2 Tax=Ectocarp... [more]
A0A6H5LA05_9PHAE2.730e-2590.00S5 DRBM domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 166..186
NoneNo IPR availableGENE3D3.30.160.20coord: 202..264
e-value: 7.3E-14
score: 53.5
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 208..262
IPR013810Ribosomal protein S5, N-terminalPFAMPF00333Ribosomal_S5coord: 211..263
e-value: 1.2E-15
score: 57.2
IPR013810Ribosomal protein S5, N-terminalPROSITEPS50881S5_DSRBDcoord: 210..264
score: 13.588

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15959contigH-elongata_contig15959:1209..4624 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15959.3842.1mRNA_H-elongata_contig15959.3842.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig15959 449..4676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig15959.3842.1 ID=prot_H-elongata_contig15959.3842.1|Name=mRNA_H-elongata_contig15959.3842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MASTAVPRTVHVSLKRAYHIYSPKYRSSTLSVLWSVAAPLGRPKQQPSKQ
HLQALSFHTTAVVLARKKEKSPKSSFNVIGNLDKESESAVPKPHISMTES
DKPDMMDLVDLIMAGTSYQDAVKGTEFDTLDEETTQKFEESIRRFTAQRE
YRLEEYLQSKGEVELLNNVRNIKSKSNTNVKESEEEVVPPPPPAMARKSG
EGVQMAQGKWAEILVHSDRVTKTVKGGMEVQYRALVTVGNLHGVGGFAIG
KAANPAEAITEASR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013810Ribosomal_S5_N