mRNA_H-elongata_contig15959.3843.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15959.3843.1
Unique NamemRNA_H-elongata_contig15959.3843.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig15959.3843.1 vs. uniprot
Match: D7FTY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY1_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.430e-14
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   25 LGAGGSSRARINKQFIVNTVDGLKSHNRREEEEDCWRQHRLELETQHRM-SQTASRRRKNKKNAKGINASVPSNATDERQFWAQAKAQAMGA 297
            +  GGS RA +NK F++NTV GLKSHN+REEEEDCWRQH LE   + R+ +  A+R R+N     G  ++  ++  D R+FWA+ K + M A
Sbjct:    6 MSRGGSGRAGVNKNFLLNTVHGLKSHNKREEEEDCWRQHGLEQRARERLLAHDANRNRRNVPADGGDTSASHASDVDARRFWAERKERTMTA 97
[Close]
BLAST of mRNA_H-elongata_contig15959.3843.1 vs. uniprot
Match: A0A6H5KLX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX3_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.470e-13
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:   25 LGAGGSSRARINKQFIVNTVDGLKSHNRREEEEDCWRQHRLELETQHRMSQTASRRRKNKKNAKGINASVP-SNATDERQFWAQAKAQAMGA 297
            +  GGSSRA +NK F++NTV GL+SHN+REEEEDCWRQ+ LE   + R+    + R + K  A G + S   ++  D R+FWA+ K +AM A
Sbjct:   17 MSRGGSSRAGVNKNFLLNTVHGLQSHNKREEEEDCWRQYGLEQRARERLLAHDANRNRQKFPADGGDTSASHASDVDARRFWAERKERAMTA 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15959.3843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTY1_ECTSI5.430e-1447.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLX3_9PHAE6.470e-1347.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15959contigH-elongata_contig15959:4886..5960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002810.1
Exons1
Model size1075
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15959.3843.1prot_H-elongata_contig15959.3843.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15959 4898..5632 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.541935-UTR-H-elongata_contig15959:4885..48971622929938.541935-UTR-H-elongata_contig15959:4885..4897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15959 4886..4897 +
1691679215.472975-UTR-H-elongata_contig15959:4885..48971691679215.472975-UTR-H-elongata_contig15959:4885..4897Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15959 4886..4897 +
1622929938.57484-UTR-H-elongata_contig15959:5632..59601622929938.57484-UTR-H-elongata_contig15959:5632..5960Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15959 5633..5960 +
1691679215.488329-UTR-H-elongata_contig15959:5632..59601691679215.488329-UTR-H-elongata_contig15959:5632..5960Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15959 5633..5960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.5578265-CDS-H-elongata_contig15959:4897..56321622929938.5578265-CDS-H-elongata_contig15959:4897..5632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15959 4898..5632 +
1691679215.4807117-CDS-H-elongata_contig15959:4897..56321691679215.4807117-CDS-H-elongata_contig15959:4897..5632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15959 4898..5632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15959.3843.1

>prot_H-elongata_contig15959.3843.1 ID=prot_H-elongata_contig15959.3843.1|Name=mRNA_H-elongata_contig15959.3843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=245bp
MERSLGAGGSSRARINKQFIVNTVDGLKSHNRREEEEDCWRQHRLELETQ
HRMSQTASRRRKNKKNAKGINASVPSNATDERQFWAQAKAQAMGAAQSDG
TQISPPLASIESGTSLTFSGQAVAREVQERYTGKTERSEEIKDEVGNKDR
LEEWCRLEQCQGPPKSKKHKRGRRDKGISASNSISTIHCNSLNGREGDLD
NLDSESKESRRHANSATDCGKRQDIDNSRRNRKKKKRSKDKRKK*
back to top

mRNA from alignment at H-elongata_contig15959:4886..5960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15959.3843.1 ID=mRNA_H-elongata_contig15959.3843.1|Name=mRNA_H-elongata_contig15959.3843.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1075bp|location=Sequence derived from alignment at H-elongata_contig15959:4886..5960+ (Himanthalia elongata Himel1 dioecious)
GATTTCTTCTCCATGGAACGATCTTTAGGCGCAGGAGGAAGCTCTCGAGC
ACGAATCAACAAACAATTCATTGTCAATACCGTGGATGGTCTAAAGTCTC
ACAATCGAAGAGAGGAAGAGGAAGACTGCTGGCGACAACATCGATTGGAG
CTAGAAACACAGCATCGCATGTCCCAAACCGCCTCCCGAAGACGGAAAAA
TAAGAAGAATGCTAAGGGAATCAATGCATCTGTGCCTTCAAACGCAACTG
ACGAGCGCCAATTTTGGGCCCAGGCGAAAGCTCAAGCTATGGGTGCGGCG
CAATCAGATGGTACGCAGATATCCCCTCCTCTAGCAAGCATAGAATCGGG
CACGAGCTTAACTTTTTCAGGGCAGGCCGTAGCTCGAGAAGTTCAAGAGA
GATATACAGGGAAAACGGAGCGCTCTGAAGAAATCAAAGACGAAGTCGGA
AATAAGGATCGATTGGAGGAGTGGTGTCGATTGGAGCAATGTCAAGGACC
ACCAAAAAGCAAGAAGCACAAGCGAGGGAGACGAGATAAAGGGATAAGTG
CTAGTAATAGTATTAGTACTATTCATTGTAATTCTCTTAATGGGAGAGAA
GGTGATCTTGACAATCTTGACAGTGAAAGCAAGGAAAGTAGAAGACACGC
CAACTCCGCTACCGACTGCGGTAAGAGGCAGGATATCGATAATTCGCGGC
GAAACCGTAAGAAAAAGAAGCGTTCCAAGGATAAGCGCAAAAAGTAATAG
CGTGGTCACTCACACCTCTCGAGGACATAATGCTCCGCCTTAGCGTCGGC
AGTGCCATTCCTGACGACATCAGAATCGAGTGATCGATTGTGACTGCCCG
TGTGCGTTATTTGAAGCTGTAGAGTTAGCTCGGCAGAAATACCTGGTACG
CCATAGCCATGAGTGTAGGGCTAGAACTATGCTTATATTGATGATGCTGG
GTACAGATACCGGGTACAACCCAACAACTGTCTCATCATAATATACTACT
GTACTGTATAATGTACTGGCACTCTCCAGCGGAAGGTAATATTCATACGA
GCTCACGGGCCGCAAAGTTCCTCCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig15959:4886..5960+

>mRNA_H-elongata_contig15959.3843.1 ID=mRNA_H-elongata_contig15959.3843.1|Name=mRNA_H-elongata_contig15959.3843.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1470bp|location=Sequence derived from alignment at H-elongata_contig15959:4886..5960+ (Himanthalia elongata Himel1 dioecious)
ATGGAACGATCTTTAGGCGCAGGAGGAAGCTCTCGAGCACGAATCAACAA
ACAATTCATTGTCAATACCGTGGATGGTCTAAAGTCTCACAATCGAAGAG
AGGAAGAGGAAGACTGCTGGCGACAACATCGATTGGAGCTAGAAACACAG
CATCGCATGTCCCAAACCGCCTCCCGAAGACGGAAAAATAAGAAGAATGC
TAAGGGAATCAATGCATCTGTGCCTTCAAACGCAACTGACGAGCGCCAAT
TTTGGGCCCAGGCGAAAGCTCAAGCTATGGGTGCGGCGCAATCAGATGGT
ACGCAGATATCCCCTCCTCTAGCAAGCATAGAATCGGGCACGAGCTTAAC
TTTTTCAGGGCAGGCCGTAGCTCGAGAAGTTCAAGAGAGATATACAGGGA
AAACGGAGCGCTCTGAAGAAATCAAAGACGAAGTCGGAAATAAGGATCGA
TTGGAGGAGTGGTGTCGATTGGAGCAATGTCAAGGACCACCAAAAAGCAA
GAAGCACAAGCGAGGGAGACGAGATAAAGGGATAAGTGCTAGTAATAGTA
TTAGTACTATTCATTGTAATTCTCTTAATGGGAGAGAAGGTGATCTTGAC
AATCTTGACAGTGAAAGCAAGGAAAGTAGAAGACACGCCAACTCCGCTAC
CGACTGCGGTAAGAGGCAGGATATCGATAATTCGCGGCGAAACCGTAAGA
AAAAGAAGCGTTCCAAGGATAAGCGCAAAAAGTAAATGGAACGATCTTTA
GGCGCAGGAGGAAGCTCTCGAGCACGAATCAACAAACAATTCATTGTCAA
TACCGTGGATGGTCTAAAGTCTCACAATCGAAGAGAGGAAGAGGAAGACT
GCTGGCGACAACATCGATTGGAGCTAGAAACACAGCATCGCATGTCCCAA
ACCGCCTCCCGAAGACGGAAAAATAAGAAGAATGCTAAGGGAATCAATGC
ATCTGTGCCTTCAAACGCAACTGACGAGCGCCAATTTTGGGCCCAGGCGA
AAGCTCAAGCTATGGGTGCGGCGCAATCAGATGGTACGCAGATATCCCCT
CCTCTAGCAAGCATAGAATCGGGCACGAGCTTAACTTTTTCAGGGCAGGC
CGTAGCTCGAGAAGTTCAAGAGAGATATACAGGGAAAACGGAGCGCTCTG
AAGAAATCAAAGACGAAGTCGGAAATAAGGATCGATTGGAGGAGTGGTGT
CGATTGGAGCAATGTCAAGGACCACCAAAAAGCAAGAAGCACAAGCGAGG
GAGACGAGATAAAGGGATAAGTGCTAGTAATAGTATTAGTACTATTCATT
GTAATTCTCTTAATGGGAGAGAAGGTGATCTTGACAATCTTGACAGTGAA
AGCAAGGAAAGTAGAAGACACGCCAACTCCGCTACCGACTGCGGTAAGAG
GCAGGATATCGATAATTCGCGGCGAAACCGTAAGAAAAAGAAGCGTTCCA
AGGATAAGCGCAAAAAGTAA
back to top