mRNA_H-elongata_contig159586.3841.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159586.3841.1
Unique NamemRNA_H-elongata_contig159586.3841.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: A0A6H5L759_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L759_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.110e-22
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 MTLIPGWLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            +TLIPGW   FYLL S TDD +IK FDPFAILGVTPST AR+IKKQYR LSLIYHPDK
Sbjct:   77 LTLIPGWACFFYLLNSMTDDAEIKGFDPFAILGVTPSTEAREIKKQYRALSLIYHPDK 134
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BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: A0A7R9UDC6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDC6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.120e-12
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 WLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            W+ + YL    +DD +IK FDPFAILGV P+     IKK YRK+SLIYHPDK
Sbjct:   85 WVLLVYLAILVSDDAEIKQFDPFAILGVDPAATEAQIKKAYRKMSLIYHPDK 136
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BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: A0A024GV26_9STRA (J domain-containing protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GV26_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.670e-11
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 WLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            W+ +F ++     D++IK+FDPF ILG+T     RDIK+ YRK+SL+YHPDK
Sbjct:   86 WICLFRMISLLETDSEIKSFDPFNILGITAQASERDIKRAYRKMSLLYHPDK 137
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BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: A0A6U6V0P2_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6V0P2_9DINO)

HSP 1 Score: 66.2 bits (160), Expect = 3.660e-11
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 WLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            W+ ++ ++     D ++K FDPF IL VTPS  A DIKK YRKLSL++HPDK
Sbjct:  108 WVGLYMVITQLGSDTEVKGFDPFRILEVTPSASAADIKKAYRKLSLVWHPDK 159
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BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: M4C568_HYAAE (J domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C568_HYAAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.820e-11
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 MTLIPGWLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            + L+  W  +  +     DD++IK+FDPFAILG++     R+IK+ YRK+SL+YHPDK
Sbjct:   80 LVLVAVWYGLVRMAMLLKDDSEIKSFDPFAILGISAGVSEREIKRAYRKMSLLYHPDK 137
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BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: A0A484E176_BRELC (J domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E176_BRELC)

HSP 1 Score: 65.5 bits (158), Expect = 6.840e-11
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   19 WLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            W  +  ++    DD++IK+FDPFAILG+   T  R+IK+ YRK+SL+YHPDK
Sbjct:  160 WYALVRMMLLLKDDSEIKSFDPFAILGIAAGTTEREIKRAYRKMSLLYHPDK 211
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BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: K3WHY4_GLOUD (J domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHY4_GLOUD)

HSP 1 Score: 64.3 bits (155), Expect = 1.740e-10
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 WLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            W  ++ +     DD++IK+FDPFAILG+      R+IK+ YRK+SLIYHPDK
Sbjct:   86 WYGLYQMAILLKDDSEIKSFDPFAILGIAAGASEREIKRAYRKMSLIYHPDK 137
[Close]
BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: A0A067CVT6_SAPPC (J domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CVT6_SAPPC)

HSP 1 Score: 63.9 bits (154), Expect = 2.380e-10
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 WLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            W  ++ ++    DD++IK FDPFAILG+      ++IK+ YRK+SL+YHPDK
Sbjct:   86 WYGLYTMIMLVKDDSEIKTFDPFAILGIASGASEQEIKRAYRKMSLLYHPDK 137
[Close]
BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: T0QAI6_SAPDV (J domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QAI6_SAPDV)

HSP 1 Score: 63.9 bits (154), Expect = 2.380e-10
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 WLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            W  ++ ++    DD++IK FDPFAILG+      ++IK+ YRK+SL+YHPDK
Sbjct:   86 WYGLYTMIMLVKDDSEIKTFDPFAILGIASGASEQEIKRAYRKMSLLYHPDK 137
[Close]
BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Match: H3GMB5_PHYRM (J domain-containing protein n=27 Tax=Peronosporaceae TaxID=4777 RepID=H3GMB5_PHYRM)

HSP 1 Score: 63.2 bits (152), Expect = 4.450e-10
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 MTLIPGWLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKLSLIYHPDK 174
            + L   W  +  +     DD++IK+FDPFAILG+      R+IK+ YRK+SL+YHPDK
Sbjct:   80 LVLAAVWYALVRMALLLKDDSEIKSFDPFAILGIAAGVSEREIKRAYRKMSLLYHPDK 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159586.3841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L759_9PHAE1.110e-2279.31J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A7R9UDC6_9STRA4.120e-1259.62Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A024GV26_9STRA2.670e-1151.92J domain-containing protein n=3 Tax=Albugo TaxID=6... [more]
A0A6U6V0P2_9DINO3.660e-1153.85Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
M4C568_HYAAE6.820e-1146.55J domain-containing protein n=1 Tax=Hyaloperonospo... [more]
A0A484E176_BRELC6.840e-1151.92J domain-containing protein n=1 Tax=Bremia lactuca... [more]
K3WHY4_GLOUD1.740e-1051.92J domain-containing protein n=1 Tax=Globisporangiu... [more]
A0A067CVT6_SAPPC2.380e-1048.08J domain-containing protein n=3 Tax=Saprolegniacea... [more]
T0QAI6_SAPDV2.380e-1048.08J domain-containing protein n=1 Tax=Saprolegnia di... [more]
H3GMB5_PHYRM4.450e-1046.55J domain-containing protein n=27 Tax=Peronosporace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159586contigH-elongata_contig159586:868..1059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5e-19
Seed eggNOG ortholog2880.D7G5A7
KEGG koko:K09540
KEGG TC3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,map03060,map04141
GOsGO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141
EggNOG free text desc.posttranslational protein targeting to membrane, translocation
EggNOG OGsCOG1204@1,COG5407@1,KOG0721@2759,KOG0951@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDnaJ-like/ Sec63 translocase subunit
Ec32 orthologEc-14_006830.1
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929938.4963207-CDS-H-elongata_contig159586:867..10591622929938.4963207-CDS-H-elongata_contig159586:867..1059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159586 868..1059 +
1691679215.4627628-CDS-H-elongata_contig159586:867..10591691679215.4627628-CDS-H-elongata_contig159586:867..1059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159586 868..1059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159586.3841.1prot_H-elongata_contig159586.3841.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159586 868..1059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159586.3841.1

>prot_H-elongata_contig159586.3841.1 ID=prot_H-elongata_contig159586.3841.1|Name=mRNA_H-elongata_contig159586.3841.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MTLIPGWLYMFYLLQSTTDDNQIKAFDPFAILGVTPSTPARDIKKQYRKL
SLIYHPDKVCNIM*
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mRNA from alignment at H-elongata_contig159586:868..1059+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159586.3841.1 ID=mRNA_H-elongata_contig159586.3841.1|Name=mRNA_H-elongata_contig159586.3841.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig159586:868..1059+ (Himanthalia elongata Himel1 dioecious)
ATGACGCTTATTCCAGGGTGGCTGTATATGTTCTACCTGCTGCAGTCCAC
GACCGATGATAATCAGATCAAGGCCTTCGACCCCTTTGCCATCCTCGGGG
TCACTCCCAGCACTCCCGCTAGAGATATCAAGAAGCAGTACAGGAAGCTA
TCGCTTATTTATCACCCGGACAAGGTATGTAATATAATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig159586:868..1059+

>mRNA_H-elongata_contig159586.3841.1 ID=mRNA_H-elongata_contig159586.3841.1|Name=mRNA_H-elongata_contig159586.3841.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig159586:868..1059+ (Himanthalia elongata Himel1 dioecious)
ATGACGCTTATTCCAGGGTGGCTGTATATGTTCTACCTGCTGCAGTCCAC
GACCGATGATAATCAGATCAAGGCCTTCGACCCCTTTGCCATCCTCGGGG
TCACTCCCAGCACTCCCGCTAGAGATATCAAGAAGCAGTACAGGAAGCTA
TCGCTTATTTATCACCCGGACAAGGTATGTAATATAATGTAAATGACGCT
TATTCCAGGGTGGCTGTATATGTTCTACCTGCTGCAGTCCACGACCGATG
ATAATCAGATCAAGGCCTTCGACCCCTTTGCCATCCTCGGGGTCACTCCC
AGCACTCCCGCTAGAGATATCAAGAAGCAGTACAGGAAGCTATCGCTTAT
TTATCACCCGGACAAGGTATGTAATATAATGTAA
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