prot_H-elongata_contig159542.3839.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig159542.3839.1
Unique Nameprot_H-elongata_contig159542.3839.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length111
Homology
[Close]
BLAST of mRNA_H-elongata_contig159542.3839.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.880e-13
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 0 
Query:    1 MADWIGAEALPPTLAVIDSESRLHVFELDDGASSEGADEDARAGAVCFAAGSGEAESSYRDLQRMRADWQQERWNSGIGGSTMSLTNSNRSLHMKGMM 98
            M+DW+GAEALPP LAVID E RLHVFELDDGASS G + DA  G       +G+  SS   +   R   +         GS  SL+N++R LHMK ++
Sbjct:  730 MSDWVGAEALPPALAVIDGEKRLHVFELDDGASSSGENLDANGGG---GVSTGDGLSSLVGMLGKRTPTKSST------GSLASLSNASRDLHMKDLV 818
[Close]
BLAST of mRNA_H-elongata_contig159542.3839.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.220e-12
Identity = 52/113 (46.02%), Postives = 63/113 (55.75%), Query Frame = 0 
Query:    1 MADWIGAEALPPTLAVIDSESRLHVFELDDGASSEGADEDARAGAVCFAAGS-GEAESSYRDLQRMRADWQQERWNSGIGGSTMSLTNSNRSLHMKGMM-EDSKESDRSTHER 111
            M+DW+GAEALPP LAVID E RLHVFELDDG SS G   DA  G         G+  SS   +   R   +         GS  SL+N++R LHMK ++ +D KE   S  ER
Sbjct:  730 MSDWVGAEALPPALAVIDGEKRLHVFELDDGVSSSGEILDANGGGXXXXXXXXGDGLSSLAGMPGKRTPTKSST------GSLASLSNASRDLHMKDLVGQDGKERPPSPQER 836
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159542.3839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI1.880e-1347.96PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE1.220e-1246.02PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159542contigH-elongata_contig159542:791..1123 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159542.3839.1mRNA_H-elongata_contig159542.3839.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig159542 791..1123 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig159542.3839.1 ID=prot_H-elongata_contig159542.3839.1|Name=mRNA_H-elongata_contig159542.3839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MADWIGAEALPPTLAVIDSESRLHVFELDDGASSEGADEDARAGAVCFAA
GSGEAESSYRDLQRMRADWQQERWNSGIGGSTMSLTNSNRSLHMKGMMED
SKESDRSTHER
back to top