mRNA_H-elongata_contig159522.3835.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159522.3835.1
Unique NamemRNA_H-elongata_contig159522.3835.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: D8LMD4_ECTSI (DWNN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.440e-27
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1
Query:    1 MASTVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTKE 171
            MAS VKFKFKSAR+YD V F GTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKT+E
Sbjct:    1 MASMVKFKFKSAREYDSVSFPGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTRE 57          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: A0A6H5LL05_9PHAE (DWNN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL05_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.160e-27
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 1
Query:    1 MASTVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTKE 171
            MAS VKFKFKSAR+YD V F GTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKT+E
Sbjct:    1 MASIVKFKFKSAREYDSVSFPGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTRE 57          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: A0A836CNQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.260e-17
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1
Query:    1 MASTVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTKE 171
            MASTV +KFKSA+D+D V F+G  I L DLKRAIVEQK LH+GM+FDL IVND+TKE
Sbjct:    1 MASTVHYKFKSAKDFDAVAFSGMVISLFDLKRAIVEQKNLHKGMDFDLAIVNDQTKE 57          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: A0A0L8GSV9_OCTBM (DWNN domain-containing protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8GSV9_OCTBM)

HSP 1 Score: 61.6 bits (148), Expect = 6.530e-11
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    7 STVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTKEGTDRRVC 192
            S+V +KFKS  +YD V F G  I L DLK+AI++QKKL + +EFDL I N ++ E   R VC
Sbjct:    2 SSVHYKFKSCLNYDTVTFDGLHISLADLKKAIIQQKKLGKSVEFDLQITNAQSNE---RYVC 60          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: A0A5D6Y1K7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1K7_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.510e-11
Identity = 28/49 (57.14%), Postives = 43/49 (87.76%), Query Frame = 1
Query:   10 TVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVN 156
            ++ FKFKSA+++D V FAGT I++LDLK+AI+E+KKL++G++FDL I +
Sbjct:    2 SIHFKFKSAKEFDTVAFAGTVIRVLDLKKAIIEKKKLNKGLDFDLVITD 50          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: A0A7S0ZB63_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZB63_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 7.530e-11
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 MASTVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKT 165
            MA+ V FKFKSA+DYD V F G  +K+ DLK AIVEQKKL  G +FDL I + +T
Sbjct:    1 MAAAVHFKFKSAKDYDTVTFDGEYLKVADLKVAIVEQKKLSFGEDFDLQIQDAQT 55          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: A0A1Y1YZ17_9FUNG (DWNN-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YZ17_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 2.510e-10
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    7 STVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTKE 171
            S V +KFKSA+DYD+  F GTGI + DLKR I+  KKL +G +FDL + N +T E
Sbjct:    2 SVVYYKFKSAKDYDVCTFDGTGISVFDLKREIILAKKLGKGTDFDLAVYNAQTNE 56          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: F0WXU8_9STRA (Uncharacterized protein AlNc14C364G11035 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WXU8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.590e-10
Identity = 28/49 (57.14%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   10 TVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVN 156
            ++ FKFKSA+D+D V F GT I+++DLK+AIVE+KKL++G++FDL I +
Sbjct:    2 SIHFKFKSAKDFDTVNFPGTVIRVIDLKKAIVEKKKLNKGLDFDLVITD 50          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: A0A024GLF0_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GLF0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.590e-10
Identity = 28/49 (57.14%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   10 TVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVN 156
            ++ FKFKSA+D+D V F GT I+++DLK+AIVE+KKL++G++FDL I +
Sbjct:    2 SIHFKFKSAKDFDTVNFPGTVIRVIDLKKAIVEKKKLNKGLDFDLVITD 50          
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Match: UPI00071D8F9E (E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=UPI00071D8F9E)

HSP 1 Score: 61.6 bits (148), Expect = 4.260e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    7 STVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNIVNDKTKEGTDRRVC 192
            S+V +KFKS  +YD V F G  I L DLK+AI++QKKL + +EFDL I N ++ E   R VC
Sbjct:    2 SSVHYKFKSCLNYDTVTFDGLHISLADLKKAIIQQKKLGKSVEFDLQITNAQSNE---RYVC 60          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159522.3835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMD4_ECTSI2.440e-2789.47DWNN domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LL05_9PHAE7.160e-2789.47DWNN domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CNQ4_9STRA1.260e-1771.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L8GSV9_OCTBM6.530e-1151.61DWNN domain-containing protein n=1 Tax=Octopus bim... [more]
A0A5D6Y1K7_9STRA7.510e-1157.14Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0ZB63_9RHOD7.530e-1160.00Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A1Y1YZ17_9FUNG2.510e-1054.55DWNN-domain-containing protein n=1 Tax=Basidiobolu... [more]
F0WXU8_9STRA3.590e-1057.14Uncharacterized protein AlNc14C364G11035 n=1 Tax=A... [more]
A0A024GLF0_9STRA3.590e-1057.14Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
UPI00071D8F9E4.260e-1051.61E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Oct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159522contigH-elongata_contig159522:985..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog36331.EPrPI00000016815
KEGG koko:K10624,ko:K15541
KEGG Pathwayko03015,map03015
EggNOG free text desc.DWNN
EggNOG OGs1MCDB@121069,COG5222@1,KOG0314@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDWNN domain
Ec32 orthologEc-05_002370.2
Exons1
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.9811485-CDS-H-elongata_contig159522:984..11821622929937.9811485-CDS-H-elongata_contig159522:984..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159522 985..1182 -
1691679215.2368472-CDS-H-elongata_contig159522:984..11821691679215.2368472-CDS-H-elongata_contig159522:984..1182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159522 985..1182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159522.3835.1prot_H-elongata_contig159522.3835.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159522 985..1182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159522.3835.1

>prot_H-elongata_contig159522.3835.1 ID=prot_H-elongata_contig159522.3835.1|Name=mRNA_H-elongata_contig159522.3835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MASTVKFKFKSARDYDIVCFAGTGIKLLDLKRAIVEQKKLHQGMEFDLNI
VNDKTKEGTDRRVCK*
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mRNA from alignment at H-elongata_contig159522:985..1182-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159522.3835.1 ID=mRNA_H-elongata_contig159522.3835.1|Name=mRNA_H-elongata_contig159522.3835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig159522:985..1182- (Himanthalia elongata Himel1 dioecious)
ATGGCATCTACCGTGAAGTTTAAGTTCAAATCGGCGAGGGATTATGACAT TGTGTGTTTTGCCGGGACGGGGATCAAGCTGCTGGACCTCAAACGGGCGA TTGTCGAGCAGAAGAAGCTTCACCAGGGAATGGAGTTCGATCTCAACATC GTGAACGACAAGACAAAAGAAGGTACAGACAGAAGAGTATGTAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig159522:985..1182-

>mRNA_H-elongata_contig159522.3835.1 ID=mRNA_H-elongata_contig159522.3835.1|Name=mRNA_H-elongata_contig159522.3835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig159522:985..1182- (Himanthalia elongata Himel1 dioecious)
ATGGCATCTACCGTGAAGTTTAAGTTCAAATCGGCGAGGGATTATGACAT
TGTGTGTTTTGCCGGGACGGGGATCAAGCTGCTGGACCTCAAACGGGCGA
TTGTCGAGCAGAAGAAGCTTCACCAGGGAATGGAGTTCGATCTCAACATC
GTGAACGACAAGACAAAAGAAGGTACAGACAGAAGAGTATGTAAATAAAT
GGCATCTACCGTGAAGTTTAAGTTCAAATCGGCGAGGGATTATGACATTG
TGTGTTTTGCCGGGACGGGGATCAAGCTGCTGGACCTCAAACGGGCGATT
GTCGAGCAGAAGAAGCTTCACCAGGGAATGGAGTTCGATCTCAACATCGT
GAACGACAAGACAAAAGAAGGTACAGACAGAAGAGTATGTAAATAA
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