mRNA_H-elongata_contig159464.3834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159464.3834.1
Unique NamemRNA_H-elongata_contig159464.3834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159464.3834.1 vs. uniprot
Match: A0A6H5KTG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-7
Identity = 31/51 (60.78%), Postives = 33/51 (64.71%), Query Frame = 2 
Query:  443 RFELGSAPWDPARAEYLVVACHGTERLVAGWRRASDFRSLAKVAQNTSMPK 595
            RF LG AP     A+YLVV C G E+LVAGWRRASDF  LA  A    MPK
Sbjct:  409 RFPLGLAP---PYAQYLVVVCMGREKLVAGWRRASDFEKLAATASKAWMPK 456
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BLAST of mRNA_H-elongata_contig159464.3834.1 vs. uniprot
Match: D8LDV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.200e-6
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:  485 EYLVVACHGTERLVAGWRRASDFRSLAKVAQNTSMPK 595
            +YLVV C G E+LVAGWRRASDF  LA +A+   MPK
Sbjct:  161 KYLVVVCMGREKLVAGWRRASDFEKLAAIARKAWMPK 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159464.3834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTG1_9PHAE1.040e-760.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDV4_ECTSI6.200e-664.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159464contigH-elongata_contig159464:226..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159464.3834.1prot_H-elongata_contig159464.3834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159464 281..706 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.8992913-UTR-H-elongata_contig159464:225..2801622929937.8992913-UTR-H-elongata_contig159464:225..280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159464 226..280 -
1691679215.2079048-UTR-H-elongata_contig159464:225..2801691679215.2079048-UTR-H-elongata_contig159464:225..280Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159464 226..280 -
1622929937.9392931-UTR-H-elongata_contig159464:706..8201622929937.9392931-UTR-H-elongata_contig159464:706..820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159464 707..820 -
1691679215.2256835-UTR-H-elongata_contig159464:706..8201691679215.2256835-UTR-H-elongata_contig159464:706..820Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig159464 707..820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.920225-CDS-H-elongata_contig159464:280..7061622929937.920225-CDS-H-elongata_contig159464:280..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159464 281..706 -
1691679215.2181506-CDS-H-elongata_contig159464:280..7061691679215.2181506-CDS-H-elongata_contig159464:280..706Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159464 281..706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159464.3834.1

>prot_H-elongata_contig159464.3834.1 ID=prot_H-elongata_contig159464.3834.1|Name=mRNA_H-elongata_contig159464.3834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MHIRRSSFPISTRYFLDKHSQLQTVHTRFNEGTVTASERIKATSLKSHLM
PSGPTRGNKGGLGRNIMITTAAEVHHRAEHTRDSALISTLDQQLQLREVK
PRSNAWALTEIRVGVCAVGPRKSRVPRGCLPWDGEACGWMA*
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mRNA from alignment at H-elongata_contig159464:226..820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159464.3834.1 ID=mRNA_H-elongata_contig159464.3834.1|Name=mRNA_H-elongata_contig159464.3834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=595bp|location=Sequence derived from alignment at H-elongata_contig159464:226..820- (Himanthalia elongata Himel1 dioecious)
AGGAAGAGGGCCAACAGAATAACCGAGATAAACAAGTGGCGCATTATACA
TCGAGGGATCTCATTTACTGGTCATGTGGCCGCGGGTCTAGAGGGTAGCG
GTGGCACGTGCACCATGCATATTAGGCGGTCATCCTTCCCTATTTCGACC
CGTTATTTCCTGGACAAGCATAGTCAGCTGCAGACTGTCCACACTCGATT
TAACGAGGGTACCGTTACCGCAAGTGAAAGGATTAAAGCCACAAGCCTCA
AGAGCCATCTGATGCCCAGCGGGCCTACCCGTGGAAATAAAGGGGGCCTT
GGACGCAATATAATGATAACGACTGCGGCTGAGGTTCACCACCGTGCAGA
GCACACGAGGGATTCAGCGCTGATCAGTACGCTAGATCAGCAGCTGCAAC
TGAGGGAGGTCAAACCCCGGAGCAACGCTTGGGCGTTGACGGAGATTCGA
GTTGGGGTCTGCGCCGTGGGACCCCGCAAGAGCCGAGTACCTCGTGGTTG
CCTGCCATGGGACGGAGAGGCTTGTGGCTGGATGGCGTAGGGCATCCGAC
TTTAGAAGCCTGGCCAAGGTGGCGCAAAATACAAGTATGCCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig159464:226..820-

>mRNA_H-elongata_contig159464.3834.1 ID=mRNA_H-elongata_contig159464.3834.1|Name=mRNA_H-elongata_contig159464.3834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig159464:226..820- (Himanthalia elongata Himel1 dioecious)
ATGCATATTAGGCGGTCATCCTTCCCTATTTCGACCCGTTATTTCCTGGA
CAAGCATAGTCAGCTGCAGACTGTCCACACTCGATTTAACGAGGGTACCG
TTACCGCAAGTGAAAGGATTAAAGCCACAAGCCTCAAGAGCCATCTGATG
CCCAGCGGGCCTACCCGTGGAAATAAAGGGGGCCTTGGACGCAATATAAT
GATAACGACTGCGGCTGAGGTTCACCACCGTGCAGAGCACACGAGGGATT
CAGCGCTGATCAGTACGCTAGATCAGCAGCTGCAACTGAGGGAGGTCAAA
CCCCGGAGCAACGCTTGGGCGTTGACGGAGATTCGAGTTGGGGTCTGCGC
CGTGGGACCCCGCAAGAGCCGAGTACCTCGTGGTTGCCTGCCATGGGACG
GAGAGGCTTGTGGCTGGATGGCGTAGATGCATATTAGGCGGTCATCCTTC
CCTATTTCGACCCGTTATTTCCTGGACAAGCATAGTCAGCTGCAGACTGT
CCACACTCGATTTAACGAGGGTACCGTTACCGCAAGTGAAAGGATTAAAG
CCACAAGCCTCAAGAGCCATCTGATGCCCAGCGGGCCTACCCGTGGAAAT
AAAGGGGGCCTTGGACGCAATATAATGATAACGACTGCGGCTGAGGTTCA
CCACCGTGCAGAGCACACGAGGGATTCAGCGCTGATCAGTACGCTAGATC
AGCAGCTGCAACTGAGGGAGGTCAAACCCCGGAGCAACGCTTGGGCGTTG
ACGGAGATTCGAGTTGGGGTCTGCGCCGTGGGACCCCGCAAGAGCCGAGT
ACCTCGTGGTTGCCTGCCATGGGACGGAGAGGCTTGTGGCTGGATGGCGT
AG
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