mRNA_H-elongata_contig15939.3830.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15939.3830.1
Unique NamemRNA_H-elongata_contig15939.3830.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15939.3830.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.340e-25
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 LQEHFRVYNRMHPTEEYRISLKLTSGALRMFSLSPGSKNAYPFWTLEDQITTFLKVY 171
            L+EHF VYNR HPTE+YRISLKLTSGALRMF LSPGSKNAYPFWTLED+ITTFL+ Y
Sbjct: 3219 LEEHFMVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAY 3275
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BLAST of mRNA_H-elongata_contig15939.3830.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.330e-25
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 LQEHFRVYNRMHPTEEYRISLKLTSGALRMFSLSPGSKNAYPFWTLEDQITTFLKVY 171
            L EHF VYNR HPTE+YRISLKLTSGALRMF LSPGSKNAYPFWTLED+ITTFL+ Y
Sbjct: 4396 LFEHFMVYNRRHPTEQYRISLKLTSGALRMFFLSPGSKNAYPFWTLEDKITTFLQAY 4452
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15939.3830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE1.340e-2585.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHH6_ECTSI6.330e-2585.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15939contigH-elongata_contig15939:4776..4952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D8LHH6
EggNOG OGs28MMI@1,2QU5A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.429797-CDS-H-elongata_contig15939:4775..49221622929937.429797-CDS-H-elongata_contig15939:4775..4922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15939 4776..4922 -
1691679215.038074-CDS-H-elongata_contig15939:4775..49221691679215.038074-CDS-H-elongata_contig15939:4775..4922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15939 4776..4922 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929937.4415298-UTR-H-elongata_contig15939:4922..49521622929937.4415298-UTR-H-elongata_contig15939:4922..4952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15939 4923..4952 -
1691679215.049714-UTR-H-elongata_contig15939:4922..49521691679215.049714-UTR-H-elongata_contig15939:4922..4952Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15939 4923..4952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15939.3830.1prot_H-elongata_contig15939.3830.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15939 4776..4922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15939.3830.1

>prot_H-elongata_contig15939.3830.1 ID=prot_H-elongata_contig15939.3830.1|Name=mRNA_H-elongata_contig15939.3830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MHPTEEYRISLKLTSGALRMFSLSPGSKNAYPFWTLEDQITTFLKVYA*
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mRNA from alignment at H-elongata_contig15939:4776..4952-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15939.3830.1 ID=mRNA_H-elongata_contig15939.3830.1|Name=mRNA_H-elongata_contig15939.3830.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig15939:4776..4952- (Himanthalia elongata Himel1 dioecious)
CTGCAGGAACACTTCAGGGTTTACAATAGGATGCATCCAACCGAGGAGTA
TCGGATTAGTTTAAAGCTCACGTCGGGCGCACTGCGAATGTTCTCTCTGT
CTCCGGGTTCGAAAAACGCCTACCCATTTTGGACGCTTGAAGACCAAATC
ACCACGTTTCTGAAGGTATATGCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig15939:4776..4952-

>mRNA_H-elongata_contig15939.3830.1 ID=mRNA_H-elongata_contig15939.3830.1|Name=mRNA_H-elongata_contig15939.3830.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig15939:4776..4952- (Himanthalia elongata Himel1 dioecious)
ATGCATCCAACCGAGGAGTATCGGATTAGTTTAAAGCTCACGTCGGGCGC
ACTGCGAATGTTCTCTCTGTCTCCGGGTTCGAAAAACGCCTACCCATTTT
GGACGCTTGAAGACCAAATCACCACGTTTCTGAAGGTATATGCATAAATG
CATCCAACCGAGGAGTATCGGATTAGTTTAAAGCTCACGTCGGGCGCACT
GCGAATGTTCTCTCTGTCTCCGGGTTCGAAAAACGCCTACCCATTTTGGA
CGCTTGAAGACCAAATCACCACGTTTCTGAAGGTATATGCATAA
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