mRNA_H-elongata_contig15925.3824.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: D7G5S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S4_ECTSI) HSP 1 Score: 279 bits (714), Expect = 2.980e-85 Identity = 136/189 (71.96%), Postives = 165/189 (87.30%), Query Frame = 1
Query: 427 MQSMINYLMVFPVVGTIVMGYIQSLHRPMFKVLGLVDLHYVVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGLCVVLLLYVVLISLALATWSDLSGGVDPEE---MTRIACEVGVSGCCCCTWSDAVDLNIYSVPSCPEWSDPEELAEVAIVFVKLGLVTSILSMVFVLCGLWASVVFHNNLKGYQVDYI 984
MQSMINYL+VFPVVG IVMGY+QSLHRPM +VLGLVDLHYVVG+LL +A MG AGHLRHHLL+QVY+AGL VL+LY+VLI+L L +W+ L+ G DP++ + RIACEVGV GCCCC ++ +D ++Y+VP CPEWSDP+ELA+VAIVFVKLGL+TS++S+VFVLCGLWASV+FHNNLKGYQVDYI
Sbjct: 1 MQSMINYLLVFPVVGAIVMGYVQSLHRPMLEVLGLVDLHYVVGALLLVVAVMGVLAGHLRHHLLLQVYMAGLGAVLMLYLVLITLGLVSWARLADGFDPDDPEGLVRIACEVGVHGCCCCRYTPELDFSLYTVPGCPEWSDPKELAQVAIVFVKLGLLTSVMSVVFVLCGLWASVMFHNNLKGYQVDYI 189
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: D7G5S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S3_ECTSI) HSP 1 Score: 162 bits (411), Expect = 2.430e-43 Identity = 76/96 (79.17%), Postives = 82/96 (85.42%), Query Frame = 1
Query: 1 QVSLHMMVGYFWLISLVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTASAECAVPMAGFPYGSQRLWCLAKFDSELCADIKEE 288
QVSLHMMV YFWL+SLV GSMFMWSIAALDFHFNFRVWLD HWDDPAL +VRDRLC NGTAS +CAVP AGFP+GS LWC AK+DS+ C IK E
Sbjct: 5 QVSLHMMVFYFWLVSLVIGSMFMWSIAALDFHFNFRVWLDKHWDDPALANVRDRLCLNGTASDQCAVPPAGFPHGSPDLWCQAKYDSDECTAIKAE 100
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: A0A7S2R9T0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9T0_9STRA) HSP 1 Score: 120 bits (301), Expect = 2.430e-25 Identity = 104/352 (29.55%), Postives = 162/352 (46.02%), Query Frame = 1
Query: 1 QVSLHMMVGYFWLISLVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTAS-AECAV--PMAGFPYGSQRL----WCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGYIQSLHR---------------PMFKVLGLVDLHYVVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGLCVV--LLLYVVLISLALATWSDLSGGVDPEEMTRIACEVGVSGCCCCTWSDAVDLNIYSVPSCPEWSDPEELAEVAIVFVKLGLVTSILSMVFVLCGLWASVVFHNNLKGYQVDYI 984
+VSL M+V YFWL L+ ++S+ +F FR W+ H WD P + SVR C + S +CAV P F Y WC +++ C I EA D+ F + S ++ + SL L RIVT+ II +SM +INY M+ P + +++G P +G L G ++ +G FAG + + +YL G+ VV LLL + + ++ LS + + AC+ + CCCC D VD+ CPEW+ EE+ +V V++KL + +S+VFV G+ ++ + NLK Y+ +YI
Sbjct: 83 KVSLDMIVTYFWLAVLLLAPTLLFSVLMFEFQKLFRSWIKHRWDTPEMSSVRRSFCKPRSVSDTKCAVYPPSLPFKYNITDYTVDEWCEDFWNATDCRLIYIEATDQVTVFAEQALTATATASAVEILLLFFSLYLAYRIVTMSIITKSMNELINYFMILPAIAILLVGLDLKGDLSPTGDNDGSDFAEIDPAIDSIG--TLFVSAGVIILGFTLVGIFAGRAKRRRYLYLYLVGMTVVFALLLTCGIWAYQISFTLHLSFTDSQFKTQQFACDAHLYNCCCCG-EDVVDV-------CPEWTK-EEVIDVVEVYLKLAGLCGFVSLVFVSGGVMSAYLLAKNLKEYKCEYI 423
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: B8BS99_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS99_THAPS) HSP 1 Score: 88.2 bits (217), Expect = 3.990e-14 Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 1
Query: 40 ISLVTGSMFMWS------------IAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTASAECAVPM-AGFPYGSQRLWCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGYIQSLHRPMFKVLGLVDLHYV 549
++LV FMWS I D++ VWL H WD ++ R+ C +GTA AEC VP+ G Y S+ WCL K+ S C +I+ EA +F G ++ V M V+L + I+TVPI+ RS +S I + P+VG +GYI L+ P + + D++++
Sbjct: 453 VNLVRSVRFMWSLLWLLPVQIFLMIGLFDYYRVMEVWLKHWWDSASMSYFRNVFCEDGTADAECTVPIQGGASYNSEDAWCLEKYGSTECTEIRNEAQTYCTVASYIFFTSNGVWALFLVALMWVTLSVLQAIITVPIVQRSKESNIPLWLTLPIVGCFGIGYIL-LYGPSNVTVSIQDVYWI 634
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: A0A7S2R9V5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9V5_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 7.130e-13 Identity = 74/266 (27.82%), Postives = 121/266 (45.49%), Query Frame = 1
Query: 238 WCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGYIQSLHR---------------PMFKVLGLVDLHYVVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGLCVV--LLLYVVLISLALATWSDLSGGVDPEEMTRIACEVGVSGCCCCTWSDAVDLNIYSVPSCPEWSDPEELAEVAIVFVKLGLVTSILSMVFVLCGLWASVVFHNNLKGYQVDYI 984
WC +++ C I EA D+ F + S ++ + SL L RIVT+ II +SM +INY M+ P + +++G P +G L G ++ +G FAG + + +YL G+ VV LLL + + ++ LS + + AC+ + CCCC D VD+ CPEW+ EE+ +V V++KL + +S+VFV G+ ++ + NLK Y+ +YI
Sbjct: 40 WCEDFWNATDCRLIYIEATDQVTVFAEQALTATATASAVEILLLFFSLYLAYRIVTMSIITKSMNELINYFMILPAIAILLVGLDLKGDLSPTGDNDGSDFAEIDPAIDSIG--TLFVSAGVIILGFTLVGIFAGRAKRRRYLYLYLVGMTVVFALLLTCGIWAYQISFTLHLSFTDSQFKTQQFACDAHLYNCCCCG-EDVVDV-------CPEWTK-EEVIDVVEVYLKLAGLCGFVSLVFVSGGVMSAYLLAKNLKEYKCEYI 294
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: H3GVR1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVR1_PHYRM) HSP 1 Score: 72.4 bits (176), Expect = 1.240e-9 Identity = 91/367 (24.80%), Postives = 148/367 (40.33%), Query Frame = 1
Query: 46 LVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTASAECAVPMAGFPYGSQRLWCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGYIQSLHRPMFKVLGLVDLHY-VVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGL--CVVLLLYVVLISLALATWSD-LSGGVDPEEMTRIACEVGVSGCCCCT-------------------W--------------------SDAVDLN-----------IYSVPSCPEWSDPEELAEVAIVFVKLGLVTSILSMVFVLCGLWASVVFHNNLKGYQVDYI 984
LVTG +F+ AA F W+ HHW L ++RD C CA + A+ +L + V G + V+ ++ +L S+ VRIVTVPI+MRSM S++N + G + G +H M + + + VVG+L+ A++ +G + L+ +Y+ GL C+V LL + S++ ++SD L+ + + +AC++ +SGC CT W D LN I CPEWS + A + LGL ++ + F++ G +++V +L GYQ D I
Sbjct: 78 LVTG-LFVACYAAFFFQDALESWVKHHWTAHVLAALRDTSC---------------------------------CATYSD-----AVQYLEHRVAVVGAVGVACMLLVLASMYCVVRIVTVPIVMRSMLSVMNAIFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIIGSRSKSRSLLLIYIVGLGGCLVALL---VCSVSAFSFSDNLASTYNAHTSSTLACDIDLSGCTNCTDVASEMVPCEGVMHTNDDHWVSCNTTSSSGGSTSTDSGCLEDMTILNAEADQSYEQNDIAKCGKCPEWSASDVQAYLRSTLHLLGLFAVVVCL-FMIVGFASALVLRRSLAGYQTDSI 401
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: A0A3F2RM06_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM06_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.280e-9 Identity = 73/273 (26.74%), Postives = 124/273 (45.42%), Query Frame = 1
Query: 28 YFWLISLVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTASAECAVPMAGFPYGSQRLWCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGYIQSLHRPMFKVLGLVDLHY-VVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGL--CVVLLLYVVLISLALATWSD-LSGGVDPEEMTRIACEVGVSGCCCCTWSDAVD-----LNIYSVP 819
+F+L L+ +F+ AA F W+ HHW L ++R++ C CA DK +D+L + V G + V ++ ++ ++ VRIVTVPI+MRSM S+ N + V G + G +H M + + + VVG+L+ A++ +G + L+ +Y+ GL C++ LL + S++ ++SD L+ + + +AC++ +SGC CT S A D N Y VP
Sbjct: 71 FFFLNFLLLTGLFVACYAAFFFRDALESWVKHHWSSDVLAALREKEC--------CAT------------------------------YDKTVDYLEHQLVVVGAVGVVCMLLVVAAMYCVVRIVTVPIVMRSMLSVTNAVFVLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIVGSRAKSRSLLLIYVIGLGSCLIALL---VCSVSAFSFSDNLASTYNAHTSSTLACDINLSGCTNCTDSVACDGAMQTSNGYWVP 302
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: W2RHX0_PHYPN (Uncharacterized protein n=22 Tax=Phytophthora TaxID=4783 RepID=W2RHX0_PHYPN) HSP 1 Score: 72.0 bits (175), Expect = 1.620e-9 Identity = 88/364 (24.18%), Postives = 151/364 (41.48%), Query Frame = 1
Query: 46 LVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTASAECAVPMAGFPYGSQRLWCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGYIQSLHRPMFKVLGLVDLHY-VVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGL--CVVLLLYVVLISLALATWSD-LSGGVDPEEMTRIACEVGVSGCCCCT-------------------W----------------SDAVD-LNIYSVPS-----------CPEWSDPEELAEVAIVFVKLGLVTSILSMVFVLCGLWASVVFHNNLKGYQVDYI 984
LVTG +F+ A F W+ HHW L ++RD C CA E A+D+L + G + V+ ++ ++ S+ VRIVTVPIIMRSM S++N + G + G +H M + + + VVG+L+ A++ +G + L+ +Y+ GL C++ LL + S++ ++SD L+ + + +AC++ +SGC CT W SD ++ + + + + CPEWS + A + LGL ++ + F++ G +++V +L GYQ D I
Sbjct: 78 LVTG-LFVACYTAFFFQDALESWVKHHWTANVLAALRDSSC---------------------------------CATYSE-----AVDYLEYRVVAIGAIGVACMLLVIASMYCVVRIVTVPIIMRSMLSVMNAIFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGFIGSKSKSRSLLLIYIIGLGSCLIALL---VCSVSAFSFSDHLASTYNAHTSSTLACDINLSGCTNCTDMATEIIPCNGVLKTSDGFWVPCNSTSFNDGSMSSGSDCIEGMTVLNTKADQGYEQNDCGKCPEWSASDVQAYLRSTLHLLGLFAVVVCL-FMVVGFGSALVLRRSLAGYQTDSI 398
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: A0A8K1C801_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C801_PYTOL) HSP 1 Score: 71.2 bits (173), Expect = 2.790e-9 Identity = 81/368 (22.01%), Postives = 149/368 (40.49%), Query Frame = 1
Query: 16 MMVGYFWLISLVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTASAECAVPMAGFPYGSQRLWCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGY---IQSLHRPMFKVLGLVDLHYVVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGLCVVLLLYVVLISLALATWSDLSGGVDPEEMTRI-ACEVGVSGCCCCT---------------------------------WS--------DAVDLNIYSVPSCPEWSDPEELAEVAIVFVKLGLVTSILSMVFVLCGLWASVVFHNNLKGYQVDYI 984
M++ YF+L + +F+ S +A+ F + WL HW P L +R + C E D+A+ +L + G L ++ +L ++ +RIVTVPI+M+++ ++IN+ +F V+GT + GY ++S + + VVG+L+FA++ +G A + ++ +Y+ G+ + +V A + L+ + + + AC++G+SGC CT W+ +I CPEWS + A + LGL +++ F++ G A+ + +L GYQ D I
Sbjct: 67 MLMLYFFLNFFLITCLFISSYSAIAFQDSLESWLKIHWKHPVLDYLRTKPCC--------------------------------------ENYDEAVSYLESKFLILGALGFVCLLLVLAAMYCVIRIVTVPIVMKNLLTVINF--IFIVLGTGIFGYGCAVKSKDELTSGQEWIAIMFIVVGTLIFALSVIGIIASRSKSRTMLLIYIVGIGACFVALLVCAGAAFSFSDKLADNYNASQHRDVMACDIGLSGCTNCTDVPSEMVPCLGVTMDNDGIVHSCNATTAKCQQGWTLLNSPEDQGKTTNDIAECGKCPEWSQEDVHAYLKSGLQLLGLSAAVVCF-FIIVGCAAAFILRKSLAGYQTDSI 393
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Match: A0A2P4WWC0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWC0_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.920e-9 Identity = 88/367 (23.98%), Postives = 152/367 (41.42%), Query Frame = 1
Query: 46 LVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLCTNGTASAECAVPMAGFPYGSQRLWCLAKFDSELCADIKEEAVDKAMDFLSLFMNVAGGLSVSSVVEMLVSLVLTVRIVTVPIIMRSMQSMINYLMVFPVVGTIVMGYIQSLHRPMFKVLGLVDLHY-VVGSLLFAMAWMGAFAGHLRHHLLMQVYLAGL--CVVLLLYVVLISLALATWSD-LSGGVDPEEMTRIACEVGVSGCCCCT-------------------W--SDAVDLNIYSVPS-----------------------------CPEWSDPEELAEVAIVFVKLGLVTSILSMVFVLCGLWASVVFHNNLKGYQVDYI 984
LVTG +F+ AA F W+ HHW P L ++RD C C+ D A+++L + V G + V+ ++ ++ S+ VRIVTVPI+MRSM S++N + G + G +H M + + + VVG+L+ A++ +G + L+ +Y+ GL C++ LL + S++ ++SD L+ + + +AC++ + GC CT W ++ ++ S S CPEWS + A + LGL +IL +F++ G ++++ +L GYQ D I
Sbjct: 78 LVTG-LFVACYAAFFFQDALESWVKHHWTAPVLAALRDTSC------------------------CVTYSD--------------AVEYLEHRVVVIGAVGVACMLLVIASMYCVVRIVTVPIVMRSMLSVMNAVFTLLGTGLFIFGLSVKVHDEMTSGQRWIAIIFIVVGTLMVALSVLGIIGSRSKSRSLLLIYIIGLGGCLIALL---VCSVSAFSFSDHLASTYNAHTSSTLACDIDLPGCTNCTDVVSEMTSCEGVMHTYNGYWVSCNSTSSSVGSTSSDNGCIEGMTVLNAEADQGYEQNDIAHCGKCPEWSASDVQAYLRSTLHLLGLF-AILVCLFMIVGFGSALILRRSLAGYQTDSI 401 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15925.3824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15925.3824.1 >prot_H-elongata_contig15925.3824.1 ID=prot_H-elongata_contig15925.3824.1|Name=mRNA_H-elongata_contig15925.3824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp MMVGYFWLISLVTGSMFMWSIAALDFHFNFRVWLDHHWDDPALISVRDRLback to top mRNA from alignment at H-elongata_contig15925:414..7469+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15925.3824.1 ID=mRNA_H-elongata_contig15925.3824.1|Name=mRNA_H-elongata_contig15925.3824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=7056bp|location=Sequence derived from alignment at H-elongata_contig15925:414..7469+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15925:414..7469+ >mRNA_H-elongata_contig15925.3824.1 ID=mRNA_H-elongata_contig15925.3824.1|Name=mRNA_H-elongata_contig15925.3824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig15925:414..7469+ (Himanthalia elongata Himel1 dioecious)back to top |