prot_H-elongata_contig159242.3823.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig159242.3823.1
Unique Nameprot_H-elongata_contig159242.3823.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: D7FV92_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV92_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.120e-37
Identity = 86/164 (52.44%), Postives = 107/164 (65.24%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQ--------------EVSEIPRSSGRKGGGEDGSSSIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTPQTLSW-ENDCQSLPENRAEAGKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGVRE 149
            MLHEV++ALLGHPG+I+Q               +S  P  +   GG        FRVP+TITFL  TER AINR+VG+G  YRDLR F  PQ L+W E    S+    + A ++ +  GLY+RALKLGV ELLDEYA+RVAEVE++VM DPT T+ARV+ GVRE
Sbjct:    1 MLHEVILALLGHPGAIVQAEPTNSLLRTKTSSRLSTNPARASAAGG-------TFRVPDTITFLTATEREAINRVVGMGSIYRDLRNFVRPQALTWTEGGGTSV----SGAEQQQQHAGLYLRALKLGVRELLDEYAERVAEVERDVMEDPTLTLARVYAGVRE 153          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: A0A1D6LZ83_MAIZE (Gamma-tubulin complex component n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6LZ83_MAIZE)

HSP 1 Score: 90.1 bits (222), Expect = 6.090e-19
Identity = 58/156 (37.18%), Postives = 88/156 (56.41%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPRSSGRKGGGEDGSSS-----IFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWEN---DCQSLPENRAEAGKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG  G  + +VS   R +  +  GEDG+        FR+   +TFL P+ER AI R++ +G  YR+L +F+T  + LSW     D  S   +  + GK V K  +Y RA+  G+ E+L  Y   V +VE+ +++DP   +A V  G+
Sbjct:    1 MLHELLLALLGFTGDFVLDVSLPRRRAASQDAGEDGNGDGEVGPSFRLAPDLTFLQPSERTAIERLISLGFYYRELNRFATESRDLSWIQSSIDVSSPHSDNTQKGK-VRKGSVYRRAIANGITEILSVYRSAVLQVEQNLLSDPLPILATVTHGL 155          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: A0A0E0H9S6_ORYNI (Gamma-tubulin complex component n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0H9S6_ORYNI)

HSP 1 Score: 85.9 bits (211), Expect = 1.120e-16
Identity = 55/158 (34.81%), Postives = 88/158 (55.70%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPRSSGRK--------GGGEDGSSSIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWENDCQSLPENRAE--AGKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG  G  + + +  P ++ R+         GG+ G +S FR+   +TFL P+ER+AI R++ +G  YR+L +F+T  + LSW N    +     E     +V K   Y RA+  G+ E+L  Y   V +VE+ +++DP   +A V  G+
Sbjct:    1 MLHELLLALLGFTGDFVLDAASSPSATRRRRPVPPEAAAGGDVGPAS-FRLAPDLTFLQPSERSAIERLISLGFYYRELNRFATESRDLSWINSPIDVSPTHGEKTVKAKVRKGSAYRRAIANGIAEILSVYRSAVLQVEQNLLSDPLPILATVTHGL 157          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: B8AY65_ORYSI (Gamma-tubulin complex component n=11 Tax=Oryzeae TaxID=147380 RepID=B8AY65_ORYSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.120e-16
Identity = 55/158 (34.81%), Postives = 88/158 (55.70%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPRSSGRK--------GGGEDGSSSIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWENDCQSLPENRAE--AGKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG  G  + + +  P ++ R+         GG+ G +S FR+   +TFL P+ER+AI R++ +G  YR+L +F+T  + LSW N    +     E     +V K   Y RA+  G+ E+L  Y   V +VE+ +++DP   +A V  G+
Sbjct:    1 MLHELLLALLGFTGDFVLDAASSPSATRRRRPVPPEAAAGGDVGPAS-FRLAPDLTFLQPSERSAIERLISLGFYYRELNRFATESRDLSWINSPIDVSPTHGEKTVKAKVRKGSAYRRAIANGIAEILSVYRSAVLQVEQNLLSDPLPILATVTHGL 157          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: A0A2T7E8D9_9POAL (Gamma-tubulin complex component n=10 Tax=PACMAD clade TaxID=147370 RepID=A0A2T7E8D9_9POAL)

HSP 1 Score: 85.5 bits (210), Expect = 1.530e-16
Identity = 55/157 (35.03%), Postives = 89/157 (56.69%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPRSSGRK---GGGEDGSSSI---FRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWEN---DCQSLPENRAEAGKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG  G  + + S   R +  +    GG DG   +   FR+   +TFL P+ER+AI R++ +G  Y++L +F+T  + LSW     +  S   ++ + GK V K  +Y RA+  G+ E+L  Y   V +VE+ +++DP   +A V  G+
Sbjct:    1 MLHELLLALLGFTGDFVLDASPARRRAATQDAAAGGGDGDGEVGPAFRLAPDLTFLQPSERSAIERLISLGFYYKELNRFATESRDLSWVQSSVEVSSPHADKTQKGK-VRKGSVYRRAIANGITEILSVYRSAVLQVEQNLLSDPLPILATVTHGL 156          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: C5Z0H7_SORBI (Gamma-tubulin complex component n=8 Tax=Andropogoneae TaxID=147429 RepID=C5Z0H7_SORBI)

HSP 1 Score: 82.8 bits (203), Expect = 1.330e-15
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPRSSGRKGGGEDGS-------SSIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWEN---DCQSLPENRAEAGKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG  G  + + S   R +  +  G D            FR+   +TFL P+ER AI R++ +G  YR+L +F+T  + LSW     D  S   ++ + GK V K  +Y RA+  G+ E+L  Y   V +VE+ +++DP   +A V  G+
Sbjct:    1 MLHELLLALLGFTGDFVLDASPPRRRAASQEAGGDXXXXXXXEVGPAFRLAPDLTFLQPSERTAIERLISLGFYYRELNRFATESRDLSWIQSSVDVSSPHSDKTQKGK-VRKGSVYRRAIANGITEILSVYRSAVLQVEQNLLSDPLPILATVTHGL 157          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: I1HLN7_BRADI (Gamma-tubulin complex component n=21 Tax=Pooideae TaxID=147368 RepID=I1HLN7_BRADI)

HSP 1 Score: 82.4 bits (202), Expect = 1.820e-15
Identity = 55/155 (35.48%), Postives = 84/155 (54.19%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPR----SSGRKGGGEDGSSSIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWENDCQSLPENRAEA---GKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG  G  + + S   R    S+   G G+      FR+   +TFL P+ER+AI R++ +G  YR+L +F+T  + LSW      +    A+    GK V K   Y RA+  G+ E+L  Y   V +VE+ +++DP   +A V  G+
Sbjct:    1 MLHELLLALLGFTGDFVLDSSSSARRRSSSADAVGAGDGDVGPAFRLAPDLTFLQPSERSAIERLISLGFYYRELNRFATESRDLSWIQPSVDVSSPHADVTLKGK-VRKGSSYRRAIANGIAEILSVYRSAVLQVEQNLLSDPLPILATVTHGL 154          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: A0A452Y1N3_AEGTS (Gamma-tubulin complex component n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Y1N3_AEGTS)

HSP 1 Score: 82.0 bits (201), Expect = 2.090e-15
Identity = 54/155 (34.84%), Postives = 84/155 (54.19%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEI-----PRSSGRKGGGEDGSSSIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWENDCQSLPENRAEA--GKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE L+ALLG  G  + + S       P  +G  G G+ G +  FR+   +TFL P+ER+AI R++ +G  YR+L +F+T  + LSW      +    A+     +V K   Y RA+  G+ E+L  Y   V +VE+ +++DP   +A V  G+
Sbjct:    1 MLHEFLLALLGFTGDFVLDNSSARRRPEPAEAGGAGDGDVGPA--FRLAPDLTFLQPSERSAIERLISLGFYYRELNRFATESRDLSWIQSSVEVSSPNADITLNGKVRKGSAYRRAIANGIAEILSVYRSAVLQVEQNLLSDPLPILATVTHGL 153          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: A0A1Q3BGD4_CEPFO (Gamma-tubulin complex component n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BGD4_CEPFO)

HSP 1 Score: 79.0 bits (193), Expect = 2.940e-14
Identity = 52/150 (34.67%), Postives = 86/150 (57.33%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPRSSGRKGGGEDGSS--SIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWENDCQSLPENRAEAGKRVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG+ G +I +  E  +S G +   +   S  S F++   I+F+ PTER  I+RI+ +G  YR+L +F+T  + LSW       P  RA A   V+   +Y RA+  G+ E++  Y   V ++E+++++D    +A V  G+
Sbjct:    1 MLHELLLALLGYTGDLIIDEREDQKSFGIRLSPDAPISHHSTFKLAPDISFIQPTERDLIDRIITLGFYYRELDRFATKSRNLSWIRSANESPFQRATALSTVQP-SVYRRAIANGIVEIMSVYRSTVLQIEQKLLSDSMPILATVTQGL 149          
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Match: A0A6P4A807_ZIZJJ (Gamma-tubulin complex component n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4A807_ZIZJJ)

HSP 1 Score: 77.8 bits (190), Expect = 7.420e-14
Identity = 53/152 (34.87%), Postives = 85/152 (55.92%), Query Frame = 0
Query:    1 MLHEVLVALLGHPGSIIQEVSEIPRSSG--RKGGGEDGSSSIFRVPETITFLAPTERAAINRIVGIGKAYRDLRKFSTP-QTLSWENDCQSLP-ENRAEAGK-RVEKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGV 147
            MLHE+L+ALLG+ G +I +  E  +S G     G        F++   I+FL P+E+  I RIV +G  YR+L +F+T  + LSW    +  P E  +E  K R EK+ +Y RA+  G+ E+L  Y   V  +E++++++    +A V  G+
Sbjct:    1 MLHELLLALLGYTGDLIIDEREHQKSLGIGLAPGAPISDEPTFKLAPDISFLQPSEKDLIERIVTLGFYYRELERFATKSRNLSWIRSGKVCPLETTSELTKARTEKQSVYRRAIANGIVEILSVYRSAVLHIEQKLLSETVPILATVTQGL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159242.3823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV92_ECTSI4.120e-3752.44Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A1D6LZ83_MAIZE6.090e-1937.18Gamma-tubulin complex component n=1 Tax=Zea mays T... [more]
A0A0E0H9S6_ORYNI1.120e-1634.81Gamma-tubulin complex component n=8 Tax=Oryza TaxI... [more]
B8AY65_ORYSI1.120e-1634.81Gamma-tubulin complex component n=11 Tax=Oryzeae T... [more]
A0A2T7E8D9_9POAL1.530e-1635.03Gamma-tubulin complex component n=10 Tax=PACMAD cl... [more]
C5Z0H7_SORBI1.330e-1534.81Gamma-tubulin complex component n=8 Tax=Andropogon... [more]
I1HLN7_BRADI1.820e-1535.48Gamma-tubulin complex component n=21 Tax=Pooideae ... [more]
A0A452Y1N3_AEGTS2.090e-1534.84Gamma-tubulin complex component n=3 Tax=Aegilops t... [more]
A0A1Q3BGD4_CEPFO2.940e-1434.67Gamma-tubulin complex component n=1 Tax=Cephalotus... [more]
A0A6P4A807_ZIZJJ7.420e-1434.87Gamma-tubulin complex component n=1 Tax=Ziziphus j... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..131
NoneNo IPR availablePANTHERPTHR19302:SF27GAMMA-TUBULIN COMPLEX COMPONENT 4coord: 1..146
IPR041470Gamma tubulin complex component protein, N-terminalPFAMPF17681GCP_N_terminalcoord: 2..148
e-value: 1.9E-13
score: 50.7
IPR007259Gamma-tubulin complex component proteinPANTHERPTHR19302GAMMA TUBULIN COMPLEX PROTEINcoord: 1..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159242contigH-elongata_contig159242:508..954 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159242.3823.1mRNA_H-elongata_contig159242.3823.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig159242 508..957 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig159242.3823.1 ID=prot_H-elongata_contig159242.3823.1|Name=mRNA_H-elongata_contig159242.3823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MLHEVLVALLGHPGSIIQEVSEIPRSSGRKGGGEDGSSSIFRVPETITFL
APTERAAINRIVGIGKAYRDLRKFSTPQTLSWENDCQSLPENRAEAGKRV
EKEGLYVRALKLGVEELLDEYADRVAEVEKEVMADPTQTVARVHVGVRE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041470GCP_N
IPR007259GCP