mRNA_H-elongata_contig159235.3822.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig159235.3822.1
Unique NamemRNA_H-elongata_contig159235.3822.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Match: D8LRN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN4_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.020e-21
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 EQSGAGLIHSKLTKEILRKVLGKKLIKSILS---ASTYAVGVANLQTAANITNRTTVARRDLVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLLD 303
            + SG G  HSKLT EIL + LG+ ++ ++++   A       + L+   ++ NR T   R+LVG E + GRLQVVVSGPAGFVFHVEGLLA+L +P E VV LD
Sbjct:   13 DDSGTGRQHSKLTVEILERALGEPVMTAVVATKEAEARVTAKSELRPPYDL-NRMTDTLRELVGIETSSGRLQVVVSGPAGFVFHVEGLLADLHIPPEAVVTLD 115
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BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Match: A0A6H5J9F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9F0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.030e-11
Identity = 40/109 (36.70%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:   10 GAGLIHSKLTKEILRKVLGKKLIKSILSASTYAVG-----------VANLQTAANITNRTTVARRDLVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLLD 303
            G GL+  K+T+EIL+K  G  L+  +   +                    +   +  +   +   DL GT+  GG+LQVVVSGP GFVF+VE +LAE+ VP E +V LD
Sbjct:   10 GDGLLRGKVTREILQKAFGPALLALLEEFAKQEQSRHXXXXXXXXXXXXKRDEGSPEDARGITLDDLAGTDTEGGKLQVVVSGPNGFVFYVESILAEMGVPSEAIVFLD 118
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BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.500e-9
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:    4 QSGAGLIHSKLTKEILRKVLGKKLIKSILSASTYAVGVANLQTAANI-TNRTTVAR--RDLVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLLD 303
            Q G GL+  ++ +EIL  V G+ LI SI + +      +   + +++  N+       RDL+GT+ T G+LQVVVSGP  FV +V+ LL E+ VP    VLLD
Sbjct: 1388 QVGDGLVRGRVNREILETVFGEALISSIAAYNRQRALNSLACSDSDVGDNKEGEGEDDRDLIGTDQTAGKLQVVVSGPTAFVANVKQLLTEMGVPAGSTVLLD 1490
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BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Match: A0A6H5JTF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.070e-8
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:    4 QSGAGLIHSKLTKEILRKVLGKKLIKSILSASTYAVGVANLQTAANITNRTTVARRD---LVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLLD 303
            Q G GL+  ++ +EIL  V G+ L+ SI + +      +   + +++ +       D   L+GT+ T G+LQVVVSGP  FV +V+ LL ++ VP    VLLD
Sbjct:  237 QVGDGLVRGRVNREILENVFGEALLSSIAAYNRQRALNSLACSDSDVGDEKEGQGEDDGELIGTDQTAGKLQVVVSGPTAFVANVKQLLTQMGVPAGSTVLLD 339
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BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 7.560e-7
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  172 DLVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLLD 303
            DL G+ DT G+LQVVVSGP+GFVF+VE +L E+ V    +VLLD
Sbjct: 1155 DLAGSGDTPGKLQVVVSGPSGFVFYVETILTEMGVLPSAIVLLD 1198
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BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.670e-6
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  172 DLVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLLD 303
            +L G+ DT G+LQVVVSGP+GFVF+VE +L E+ V    +VLLD
Sbjct: 1849 ELAGSGDTPGKLQVVVSGPSGFVFYVETILTEMGVLPSAIVLLD 1892
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BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.240e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  172 DLVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLLD 303
            +L G++ T GRLQVVVSGP GFV  VE +L E+ +P   +VLLD
Sbjct: 1584 ELAGSDTTPGRLQVVVSGPTGFVSLVETILGEMGIPSSAIVLLD 1627
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig159235.3822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRN4_ECTSI1.020e-2150.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9F0_9PHAE1.030e-1136.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J2_ECTSI1.500e-939.81Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JTF1_9PHAE2.070e-835.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX04_ECTSI7.560e-761.36Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE2.670e-659.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE6_ECTSI9.240e-656.82Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig159235contigH-elongata_contig159235:324..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue4.9e-08
Seed eggNOG ortholog2880.D7G7J2
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929936.8738375-CDS-H-elongata_contig159235:323..5331622929936.8738375-CDS-H-elongata_contig159235:323..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159235 324..533 +
1691679214.785359-CDS-H-elongata_contig159235:323..5331691679214.785359-CDS-H-elongata_contig159235:323..533Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159235 324..533 +
1622929936.889481-CDS-H-elongata_contig159235:765..8611622929936.889481-CDS-H-elongata_contig159235:765..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159235 766..861 +
1691679214.8006177-CDS-H-elongata_contig159235:765..8611691679214.8006177-CDS-H-elongata_contig159235:765..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig159235 766..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig159235.3822.1prot_H-elongata_contig159235.3822.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig159235 324..861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig159235.3822.1

>prot_H-elongata_contig159235.3822.1 ID=prot_H-elongata_contig159235.3822.1|Name=mRNA_H-elongata_contig159235.3822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
EQSGAGLIHSKLTKEILRKVLGKKLIKSILSASTYAVGVANLQTAANITN
RTTVARRDLVGTEDTGGRLQVVVSGPAGFVFHVEGLLAELRVPREVVVLL
D*
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mRNA from alignment at H-elongata_contig159235:324..861+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig159235.3822.1 ID=mRNA_H-elongata_contig159235.3822.1|Name=mRNA_H-elongata_contig159235.3822.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=538bp|location=Sequence derived from alignment at H-elongata_contig159235:324..861+ (Himanthalia elongata Himel1 dioecious)
GAACAGTCAGGAGCTGGGCTAATACACTCAAAGCTCACCAAGGAAATTCT
ACGCAAGGTCCTGGGAAAGAAACTAATAAAATCGATTCTCTCGGCAAGTA
CTTATGCGGTAGGAGTTGCCAACCTGCAGACCGCAGCGAACATCACAAAC
AGAACAACAGTGGCTCGTCGCGATCTGGTCGGCACGGAAGACACTGGAGG
AAGGCTGCAAGTGAGGCAGAGCTGACCCCTGATTATTCAAGTTCAGCTGG
AGTTATGGTCACCACTACGTTGACGGGTTTTTTATTTAATCCTCGCCGAT
GCCTTGTTTGTCGTTGTTACGTTCCCAAGCTTTCATATAGCTCCCTCCAG
CACGTATGGATCAAACCGTGACTTAATCTCCCTCGTGGTCACACACGCTT
ATTTTCATATTTTGTGGCTCTGTATCTTCTTGTCGCCTGCAGGTAGTTGT
ATCAGGCCCAGCTGGCTTCGTGTTCCATGTTGAGGGTTTGCTGGCCGAGC
TCCGCGTACCTCGTGAAGTCGTCGTCCTGTTGGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig159235:324..861+

>mRNA_H-elongata_contig159235.3822.1 ID=mRNA_H-elongata_contig159235.3822.1|Name=mRNA_H-elongata_contig159235.3822.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig159235:324..861+ (Himanthalia elongata Himel1 dioecious)
GAACAGTCAGGAGCTGGGCTAATACACTCAAAGCTCACCAAGGAAATTCT
ACGCAAGGTCCTGGGAAAGAAACTAATAAAATCGATTCTCTCGGCAAGTA
CTTATGCGGTAGGAGTTGCCAACCTGCAGACCGCAGCGAACATCACAAAC
AGAACAACAGTGGCTCGTCGCGATCTGGTCGGCACGGAAGACACTGGAGG
AAGGCTGCAAGAACAGTCAGGAGCTGGGCTAATACACTCAAAGCTCACCA
AGGAAATTCTACGCAAGGTCCTGGGAAAGAAACTAATAAAATCGATTCTC
TCGGCAAGTACTTATGCGGTAGGAGTTGCCAACCTGCAGACCGCAGCGAA
CATCACAAACAGAACAACAGTGGCTCGTCGCGATCTGGTCGGCACGGAAG
ACACTGGAGGAAGGCTGCAAGTAGTTGTATCAGGCCCAGCTGGCTTCGTG
TTCCATGTTGAGGGTTTGCTGGCCGAGCTCCGCGTACCTCGTGAAGTCGT
CGTCCTGTTGGACTGAGTAGTTGTATCAGGCCCAGCTGGCTTCGTGTTCC
ATGTTGAGGGTTTGCTGGCCGAGCTCCGCGTACCTCGTGAAGTCGTCGTC
CTGTTGGACTGA
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