mRNA_H-elongata_contig15917.3819.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A6H5L9W0_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W0_9PHAE) HSP 1 Score: 215 bits (548), Expect = 2.050e-62 Identity = 103/141 (73.05%), Postives = 116/141 (82.27%), Query Frame = 1
Query: 4 TAPEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSL----------ELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
TAPEIRTRL+AVHGCRA D+RGCVWYN+E+GIVYP AAL VIYDPRTG+QSYH GH D+ISL VSSCRRF ASGDAADPP+VHVWDA++ E + LLPS H VGVALLAFS +GHWLAS+GHD EHT+AVY
Sbjct: 549 TAPEIRTRLDAVHGCRAEDLRGCVWYNHEEGIVYPVAALCVIYDPRTGRQSYHDGHLGDVISLTVSSCRRFAASGDAADPPRVHVWDAVTGAGVVCGAAGGETSGLLPSFHKVGVALLAFSCNGHWLASMGHDPEHTLAVY 689
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: D7FR21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR21_ECTSI) HSP 1 Score: 214 bits (545), Expect = 7.430e-62 Identity = 103/141 (73.05%), Postives = 115/141 (81.56%), Query Frame = 1
Query: 4 TAPEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSL----------ELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
TAPE+RTRL+AVHGCRA D+RGCVWYN+E+GIVYP AAL VIYDPRTG+QSYH H D+ISL VSSCRRF ASGDAADPP VHVWDA++ E + LLPSLH VGVALLAFS DGHWLAS+GHD EHT+AVY
Sbjct: 1863 TAPELRTRLDAVHGCRAEDLRGCVWYNHEEGIVYPVAALCVIYDPRTGRQSYHESHLGDVISLTVSSCRRFAASGDAADPPLVHVWDAVTGAGVVCGGAGGETSGLLPSLHRVGVALLAFSCDGHWLASMGHDPEHTLAVY 2003
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A7S2FNZ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNZ1_9STRA) HSP 1 Score: 129 bits (324), Expect = 4.120e-32 Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 10 PEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSV--GVALLAFSQDGHWLASVGHDLEHTVAVY 396
P + LE +G R+ DVRGC+ YN +++P+AA+GV+YDP T QS+H GH D+IS+AV+ A+GD+ PQV VWDA++ + +LP + G++ LAFS+DG W ASVG D HTVA +
Sbjct: 286 PNVTLELEHAYGQRSADVRGCLLYNANGSVLFPSAAVGVVYDPATNAQSFHIGHRGDVISMAVTDNGLVAATGDSHAQPQVRVWDAMTGQTLAVLPRVAQQRRGISALAFSRDGKWCASVGQDTHHTVAAF 416
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A067D8Y7_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D8Y7_SAPPC) HSP 1 Score: 119 bits (299), Expect = 1.010e-28 Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1
Query: 7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVYK 399
AP+I+ RLE V+G +A R + YN + IVY AAA+G+IYD T Q +H GH+ DI+SLA+SS RFVASG+ P + VWDA S L L H+ GV LAF+ D +ASVG D +H++A+++
Sbjct: 1689 APDIQLRLEWVYGYQADLARNNLRYNADGQIVYHAAAVGIIYDRPTNTQKHHVGHNDDILSLAISSSGRFVASGERGKKPSIRVWDARSGALLSELKGFHARGVLSLAFALDEKTIASVGDDDDHSLAIWE 1819
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A7S4KLV8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KLV8_GUITH) HSP 1 Score: 102 bits (255), Expect = 7.450e-23 Identity = 50/130 (38.46%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
AP +LE V+G R D R + YN E +VY A+GV+Y Q +++GH+ D+ISLA+ + VASG P + VW ++S++ L H +GVA ++F++DG LASVG D++H++A++
Sbjct: 18 APYNCLQLEHVYGYRGHDCRNNLMYNEEGNLVYMVGAVGVVYRKEGHMQVFYSGHTDDVISLAMHPDKVLVASGQVGKSPVILVWSSVSMQTLSTLRGFHELGVAAMSFNKDGTKLASVGLDVDHSIAIW 147
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A7S0VVP2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVP2_9CRYP) HSP 1 Score: 95.9 bits (237), Expect = 1.380e-22 Identity = 47/130 (36.15%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
AP ++E V+G R D R + Y + +VY AA+ V+YD + Q+++ H+ D+IS+A+ + +A+G P + VW A +++ L H +GVA +AFS+DG +ASVG DL+H++AV+
Sbjct: 3 APYNVLQMEHVYGFRGHDCRNNLMYTGKGKMVYMVAAICVVYDKSSHFQTFYNAHTDDVISIAMHPDQETIATGQVGKTPIIQVWSATTMQTLVTLRGFHEMGVASVAFSKDGSKIASVGLDLDHSIAVW 132
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A6P8IWD2_ACTTE (echinoderm microtubule-associated protein-like 6 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IWD2_ACTTE) HSP 1 Score: 101 bits (252), Expect = 2.160e-22 Identity = 50/123 (40.65%), Postives = 70/123 (56.91%), Query Frame = 1
Query: 28 LEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
L+ V G R D R V+Y IVY AALG++Y +Q ++TGH+ D++ LA+ + F+A+G P +HVWDA +E +L HS GV + FS DG LASVG D H + V+
Sbjct: 684 LDFVFGYRGYDCRNNVFYTQTGEIVYHVAALGIVYSRDKHKQRFYTGHTDDVLCLAIHPAKDFIATGQVGRDPAIHVWDAEKMETLSILKGQHSRGVCAVDFSGDGRKLASVGLDDNHVIVVW 806
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: J9I4R1_9SPIT (HELP domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I4R1_9SPIT) HSP 1 Score: 100 bits (250), Expect = 4.040e-22 Identity = 47/130 (36.15%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
AP+ +LE ++G R D R + YN++ +VY AA +G+++DPRT Q + H+ DI LAV R+ A+G P + VWD +++ L + G+ +AFS DG +LA+ D +HT+A+Y
Sbjct: 281 APDANLKLEHIYGYRCHDARNNLKYNHQGNLVYHAAGVGIVHDPRTNTQKFFFEHNDDIHCLAVDPSGRYAATGQIGPKPWLCVWDTETMQCVTRLQGVLLKGIKCVAFSPDGKYLAASAFDEDHTIAIY 410
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: C1EGF3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EGF3_MICCC) HSP 1 Score: 99.8 bits (247), Expect = 1.010e-21 Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 1
Query: 10 PEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVYK 399
P+ +LE VHG RA D R + Y+ + + Y AA +G + +T +Q++ H DI L + RR+VA+G P +HVW A + + H+ V LLAFS DG +LASVG D EHTVAV++
Sbjct: 100 PDDTLKLEFVHGYRAHDCRSNLGYSDDGKLCYHAAGVGCAMNTQTRKQNFFDLHDDDITCLVMHPSRRYVATGQVGASPAIHVWRASDGQRVASIRGAHNASVLLLAFSADGRYLASVGADPEHTVAVHE 229
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: C1E2H3_MICCC (Uncharacterized protein n=5 Tax=cellular organisms TaxID=131567 RepID=C1E2H3_MICCC) HSP 1 Score: 99.0 bits (245), Expect = 1.860e-21 Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query: 10 PEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
P+ +L+ V+G RA D R + YN + + YPAAA G+ YD R Q + T H+ DI+SLA+ R +A+G P + VW + + EL L H V L+F G +LASVG D +H+VA+Y
Sbjct: 64 PDHHLQLDFVYGYRAHDSRHNLVYNIDGLVTYPAAATGIAYDSREHTQQFFTMHTDDIVSLAMHPDREIMATGQVGKDPTICVWSSTTCELLAELKGFHQRAVVSLSFDGTGKYLASVGLDDDHSVAIY 192 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15917.3819.1 >prot_H-elongata_contig15917.3819.1 ID=prot_H-elongata_contig15917.3819.1|Name=mRNA_H-elongata_contig15917.3819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp MTAPEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQback to top mRNA from alignment at H-elongata_contig15917:1650..2755- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15917.3819.1 ID=mRNA_H-elongata_contig15917.3819.1|Name=mRNA_H-elongata_contig15917.3819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-elongata_contig15917:1650..2755- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15917:1650..2755- >mRNA_H-elongata_contig15917.3819.1 ID=mRNA_H-elongata_contig15917.3819.1|Name=mRNA_H-elongata_contig15917.3819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig15917:1650..2755- (Himanthalia elongata Himel1 dioecious)back to top |