mRNA_H-elongata_contig15917.3819.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15917.3819.1
Unique NamemRNA_H-elongata_contig15917.3819.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A6H5L9W0_9PHAE (HELP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W0_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.050e-62
Identity = 103/141 (73.05%), Postives = 116/141 (82.27%), Query Frame = 1
Query:    4 TAPEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSL----------ELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
            TAPEIRTRL+AVHGCRA D+RGCVWYN+E+GIVYP AAL VIYDPRTG+QSYH GH  D+ISL VSSCRRF ASGDAADPP+VHVWDA++           E + LLPS H VGVALLAFS +GHWLAS+GHD EHT+AVY
Sbjct:  549 TAPEIRTRLDAVHGCRAEDLRGCVWYNHEEGIVYPVAALCVIYDPRTGRQSYHDGHLGDVISLTVSSCRRFAASGDAADPPRVHVWDAVTGAGVVCGAAGGETSGLLPSFHKVGVALLAFSCNGHWLASMGHDPEHTLAVY 689          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: D7FR21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR21_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 7.430e-62
Identity = 103/141 (73.05%), Postives = 115/141 (81.56%), Query Frame = 1
Query:    4 TAPEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSL----------ELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
            TAPE+RTRL+AVHGCRA D+RGCVWYN+E+GIVYP AAL VIYDPRTG+QSYH  H  D+ISL VSSCRRF ASGDAADPP VHVWDA++           E + LLPSLH VGVALLAFS DGHWLAS+GHD EHT+AVY
Sbjct: 1863 TAPELRTRLDAVHGCRAEDLRGCVWYNHEEGIVYPVAALCVIYDPRTGRQSYHESHLGDVISLTVSSCRRFAASGDAADPPLVHVWDAVTGAGVVCGGAGGETSGLLPSLHRVGVALLAFSCDGHWLASMGHDPEHTLAVY 2003          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A7S2FNZ1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNZ1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.120e-32
Identity = 60/131 (45.80%), Postives = 85/131 (64.89%), Query Frame = 1
Query:   10 PEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSV--GVALLAFSQDGHWLASVGHDLEHTVAVY 396
            P +   LE  +G R+ DVRGC+ YN    +++P+AA+GV+YDP T  QS+H GH  D+IS+AV+      A+GD+   PQV VWDA++ +   +LP +     G++ LAFS+DG W ASVG D  HTVA +
Sbjct:  286 PNVTLELEHAYGQRSADVRGCLLYNANGSVLFPSAAVGVVYDPATNAQSFHIGHRGDVISMAVTDNGLVAATGDSHAQPQVRVWDAMTGQTLAVLPRVAQQRRGISALAFSRDGKWCASVGQDTHHTVAAF 416          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A067D8Y7_SAPPC (EF-hand domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D8Y7_SAPPC)

HSP 1 Score: 119 bits (299), Expect = 1.010e-28
Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 1
Query:    7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVYK 399
            AP+I+ RLE V+G +A   R  + YN +  IVY AAA+G+IYD  T  Q +H GH+ DI+SLA+SS  RFVASG+    P + VWDA S  L   L   H+ GV  LAF+ D   +ASVG D +H++A+++
Sbjct: 1689 APDIQLRLEWVYGYQADLARNNLRYNADGQIVYHAAAVGIIYDRPTNTQKHHVGHNDDILSLAISSSGRFVASGERGKKPSIRVWDARSGALLSELKGFHARGVLSLAFALDEKTIASVGDDDDHSLAIWE 1819          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A7S4KLV8_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KLV8_GUITH)

HSP 1 Score: 102 bits (255), Expect = 7.450e-23
Identity = 50/130 (38.46%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
            AP    +LE V+G R  D R  + YN E  +VY   A+GV+Y      Q +++GH+ D+ISLA+   +  VASG     P + VW ++S++    L   H +GVA ++F++DG  LASVG D++H++A++
Sbjct:   18 APYNCLQLEHVYGYRGHDCRNNLMYNEEGNLVYMVGAVGVVYRKEGHMQVFYSGHTDDVISLAMHPDKVLVASGQVGKSPVILVWSSVSMQTLSTLRGFHELGVAAMSFNKDGTKLASVGLDVDHSIAIW 147          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A7S0VVP2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VVP2_9CRYP)

HSP 1 Score: 95.9 bits (237), Expect = 1.380e-22
Identity = 47/130 (36.15%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
            AP    ++E V+G R  D R  + Y  +  +VY  AA+ V+YD  +  Q+++  H+ D+IS+A+   +  +A+G     P + VW A +++    L   H +GVA +AFS+DG  +ASVG DL+H++AV+
Sbjct:    3 APYNVLQMEHVYGFRGHDCRNNLMYTGKGKMVYMVAAICVVYDKSSHFQTFYNAHTDDVISIAMHPDQETIATGQVGKTPIIQVWSATTMQTLVTLRGFHEMGVASVAFSKDGSKIASVGLDLDHSIAVW 132          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: A0A6P8IWD2_ACTTE (echinoderm microtubule-associated protein-like 6 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IWD2_ACTTE)

HSP 1 Score: 101 bits (252), Expect = 2.160e-22
Identity = 50/123 (40.65%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   28 LEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
            L+ V G R  D R  V+Y     IVY  AALG++Y     +Q ++TGH+ D++ LA+   + F+A+G     P +HVWDA  +E   +L   HS GV  + FS DG  LASVG D  H + V+
Sbjct:  684 LDFVFGYRGYDCRNNVFYTQTGEIVYHVAALGIVYSRDKHKQRFYTGHTDDVLCLAIHPAKDFIATGQVGRDPAIHVWDAEKMETLSILKGQHSRGVCAVDFSGDGRKLASVGLDDNHVIVVW 806          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: J9I4R1_9SPIT (HELP domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9I4R1_9SPIT)

HSP 1 Score: 100 bits (250), Expect = 4.040e-22
Identity = 47/130 (36.15%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    7 APEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
            AP+   +LE ++G R  D R  + YN++  +VY AA +G+++DPRT  Q +   H+ DI  LAV    R+ A+G     P + VWD  +++    L  +   G+  +AFS DG +LA+   D +HT+A+Y
Sbjct:  281 APDANLKLEHIYGYRCHDARNNLKYNHQGNLVYHAAGVGIVHDPRTNTQKFFFEHNDDIHCLAVDPSGRYAATGQIGPKPWLCVWDTETMQCVTRLQGVLLKGIKCVAFSPDGKYLAASAFDEDHTIAIY 410          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: C1EGF3_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EGF3_MICCC)

HSP 1 Score: 99.8 bits (247), Expect = 1.010e-21
Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 1
Query:   10 PEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVYK 399
            P+   +LE VHG RA D R  + Y+ +  + Y AA +G   + +T +Q++   H  DI  L +   RR+VA+G     P +HVW A   +    +   H+  V LLAFS DG +LASVG D EHTVAV++
Sbjct:  100 PDDTLKLEFVHGYRAHDCRSNLGYSDDGKLCYHAAGVGCAMNTQTRKQNFFDLHDDDITCLVMHPSRRYVATGQVGASPAIHVWRASDGQRVASIRGAHNASVLLLAFSADGRYLASVGADPEHTVAVHE 229          
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Match: C1E2H3_MICCC (Uncharacterized protein n=5 Tax=cellular organisms TaxID=131567 RepID=C1E2H3_MICCC)

HSP 1 Score: 99.0 bits (245), Expect = 1.860e-21
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:   10 PEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQQSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPSLHSVGVALLAFSQDGHWLASVGHDLEHTVAVY 396
            P+   +L+ V+G RA D R  + YN +  + YPAAA G+ YD R   Q + T H+ DI+SLA+   R  +A+G     P + VW + + EL   L   H   V  L+F   G +LASVG D +H+VA+Y
Sbjct:   64 PDHHLQLDFVYGYRAHDSRHNLVYNIDGLVTYPAAATGIAYDSREHTQQFFTMHTDDIVSLAMHPDREIMATGQVGKDPTICVWSSTTCELLAELKGFHQRAVVSLSFDGTGKYLASVGLDDDHSVAIY 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15917.3819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9W0_9PHAE2.050e-6273.05HELP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR21_ECTSI7.430e-6273.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FNZ1_9STRA4.120e-3245.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067D8Y7_SAPPC1.010e-2847.33EF-hand domain-containing protein n=2 Tax=Saproleg... [more]
A0A7S4KLV8_GUITH7.450e-2338.46Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S0VVP2_9CRYP1.380e-2236.15Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6P8IWD2_ACTTE2.160e-2240.65echinoderm microtubule-associated protein-like 6 n... [more]
J9I4R1_9SPIT4.040e-2236.15HELP domain containing protein n=1 Tax=Oxytricha t... [more]
C1EGF3_MICCC1.010e-2140.00Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
C1E2H3_MICCC1.860e-2139.53Uncharacterized protein n=5 Tax=cellular organisms... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15917contigH-elongata_contig15917:1650..2755 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.5
Seed ortholog evalue7.7e-54
Seed eggNOG ortholog2880.D7FR21
KEGG koko:K18595,ko:K18598
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size402
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15917.3819.1prot_H-elongata_contig15917.3819.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15917 1650..2755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929936.6129475-CDS-H-elongata_contig15917:1649..17651622929936.6129475-CDS-H-elongata_contig15917:1649..1765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 1650..1765 -
1691679214.670548-CDS-H-elongata_contig15917:1649..17651691679214.670548-CDS-H-elongata_contig15917:1649..1765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 1650..1765 -
1622929936.6268375-CDS-H-elongata_contig15917:1955..19741622929936.6268375-CDS-H-elongata_contig15917:1955..1974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 1956..1974 -
1691679214.683324-CDS-H-elongata_contig15917:1955..19741691679214.683324-CDS-H-elongata_contig15917:1955..1974Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 1956..1974 -
1622929936.6393309-CDS-H-elongata_contig15917:2054..22271622929936.6393309-CDS-H-elongata_contig15917:2054..2227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 2055..2227 -
1691679214.6937957-CDS-H-elongata_contig15917:2054..22271691679214.6937957-CDS-H-elongata_contig15917:2054..2227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 2055..2227 -
1622929936.6503675-CDS-H-elongata_contig15917:2661..27551622929936.6503675-CDS-H-elongata_contig15917:2661..2755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 2662..2755 -
1691679214.709625-CDS-H-elongata_contig15917:2661..27551691679214.709625-CDS-H-elongata_contig15917:2661..2755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15917 2662..2755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15917.3819.1

>prot_H-elongata_contig15917.3819.1 ID=prot_H-elongata_contig15917.3819.1|Name=mRNA_H-elongata_contig15917.3819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MTAPEIRTRLEAVHGCRAGDVRGCVWYNYEQGIVYPAAALGVIYDPRTGQ
QSYHTGHSSDIISLAVSSCRRFVASGDAADPPQVHVWDALSLELARLLPS
LHSVGVALLAFSQDGHWLASVGHDLEHTVAVYK*
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mRNA from alignment at H-elongata_contig15917:1650..2755-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15917.3819.1 ID=mRNA_H-elongata_contig15917.3819.1|Name=mRNA_H-elongata_contig15917.3819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1106bp|location=Sequence derived from alignment at H-elongata_contig15917:1650..2755- (Himanthalia elongata Himel1 dioecious)
ATGACCGCTCCGGAGATTCGCACGAGGCTGGAGGCGGTGCACGGGTGCCG GGCGGGAGACGTTCGTGGGTGTGTCTGGTACAACTATGAGCAAGGTCCGT ATTGAACTATTCATGGACAATCAATACGGCTTTTGTTCAGTCTTGTTCCA CTGTTGGCTGCGGTGGTGTCATTTTGGTCGTTTCAGCCTCGTTTCAATCG GTGTTTGCAATGTGACGATGTAGGAGTTTATACCTGGCTATCAAGTGTTG TACTTCAGAGTTGATAAAAATATGAACTTATGTATGCCTTCGACGGTTCC CCTTGATTGGAGGCACAATCTAATTTTTGCTCGCGTCAGCCTTCACTTAC GGCACACTTACGGTAGTCACATACGGTTCTACTATAATAGGTGCCCCTGC TTTCTTATTCCTTATAAATCACGTACGTCCCTAACCAACGTTATCGACGA CAAACTACAGACTAAGAAATCACCAACTTATATTTCGCAAAGGTTAAACT CTGCCTAAACGGTCGGTATGTATTGCAGGGATCGTGTATCCTGCGGCGGC ACTTGGGGTCATTTATGATCCACGTACGGGCCAGCAGTCGTATCACACGG GCCACTCGAGCGATATCATCTCGTTGGCAGTTTCATCCTGTAGACGCTTC GTGGCATCCGGGGACGCCGCCGACCCTCCGCAGGTTCACGTTTGGGATGC TGTCACTGGCGCAGGCGAGCAACTCTGCTGCTGCTGCACTTGATTCAACG ATCCATGCACGAAGAACAAATATATTTTTAGCTCTCGCTAGAGCTCGCGC GTTTTGTATACTGGTGTAACTATCGTCAAATTGTGTGCGTTTGGTAGGTG GGGGGTGGCCCCTCAAAGTAATTGTAATGATGGAGCATATCTTACAGCGT TGCTGCCGTAGCCATTATCTCGATTTTCTACCCGATGAATCGCTCCGCAC GCTGCAGGTGCGGTGAACGGGACAGAAGGGAAATATTCAGGTTTGCTACC TTCCCTCCATAGTGTTGGCGTGGCGCTACTGGCGTTCTCACAGGATGGTC ACTGGCTGGCTTCCGTGGGACACGACTTGGAACACACCGTGGCGGTTTAT AAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig15917:1650..2755-

>mRNA_H-elongata_contig15917.3819.1 ID=mRNA_H-elongata_contig15917.3819.1|Name=mRNA_H-elongata_contig15917.3819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig15917:1650..2755- (Himanthalia elongata Himel1 dioecious)
ATGACCGCTCCGGAGATTCGCACGAGGCTGGAGGCGGTGCACGGGTGCCG
GGCGGGAGACGTTCGTGGGTGTGTCTGGTACAACTATGAGCAAGATGACC
GCTCCGGAGATTCGCACGAGGCTGGAGGCGGTGCACGGGTGCCGGGCGGG
AGACGTTCGTGGGTGTGTCTGGTACAACTATGAGCAAGGGATCGTGTATC
CTGCGGCGGCACTTGGGGTCATTTATGATCCACGTACGGGCCAGCAGTCG
TATCACACGGGCCACTCGAGCGATATCATCTCGTTGGCAGTTTCATCCTG
TAGACGCTTCGTGGCATCCGGGGACGCCGCCGACCCTCCGCAGGTTCACG
TTTGGGATGCTGGATCGTGTATCCTGCGGCGGCACTTGGGGTCATTTATG
ATCCACGTACGGGCCAGCAGTCGTATCACACGGGCCACTCGAGCGATATC
ATCTCGTTGGCAGTTTCATCCTGTAGACGCTTCGTGGCATCCGGGGACGC
CGCCGACCCTCCGCAGGTTCACGTTTGGGATGCTCTCTCGCTAGAGCTCG
CGCCTCTCGCTAGAGCTCGCGCGTTTGCTACCTTCCCTCCATAGTGTTGG
CGTGGCGCTACTGGCGTTCTCACAGGATGGTCACTGGCTGGCTTCCGTGG
GACACGACTTGGAACACACCGTGGCGGTTTATAAGTGAGTTTGCTACCTT
CCCTCCATAGTGTTGGCGTGGCGCTACTGGCGTTCTCACAGGATGGTCAC
TGGCTGGCTTCCGTGGGACACGACTTGGAACACACCGTGGCGGTTTATAA
GTGA
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