mRNA_H-elongata_contig158840.3810.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158840.3810.1
Unique NamemRNA_H-elongata_contig158840.3810.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158840.3810.1 vs. uniprot
Match: D8LFW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW8_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 5.290e-14
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 QAFCALTELSGEAAAEVRGVASEVWFSYLERLTLPPACGHSGVRVRDDFR 150
            +AFC+   LS +A AE+R V+S+VWFSYLER TLP ACG+ G+RVRDDFR
Sbjct:  154 KAFCSAAALSRDATAEMRRVSSDVWFSYLERFTLPEACGNGGIRVRDDFR 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158840.3810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFW8_ECTSI5.290e-1466.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158840contigH-elongata_contig158840:929..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005220.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.9660385-CDS-H-elongata_contig158840:928..10991622929935.9660385-CDS-H-elongata_contig158840:928..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158840 929..1099 +
1691679214.3902466-CDS-H-elongata_contig158840:928..10991691679214.3902466-CDS-H-elongata_contig158840:928..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158840 929..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158840.3810.1prot_H-elongata_contig158840.3810.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158840 929..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158840.3810.1

>prot_H-elongata_contig158840.3810.1 ID=prot_H-elongata_contig158840.3810.1|Name=mRNA_H-elongata_contig158840.3810.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
QAFCALTELSGEAAAEVRGVASEVWFSYLERLTLPPACGHSGVRVRDDFR
YQANLS*
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mRNA from alignment at H-elongata_contig158840:929..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158840.3810.1 ID=mRNA_H-elongata_contig158840.3810.1|Name=mRNA_H-elongata_contig158840.3810.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig158840:929..1099+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTTCTGCGCCTTGACGGAGCTGTCGGGAGAAGCGGCGGCCGAGGT
TAGGGGAGTGGCCTCCGAGGTATGGTTCTCTTACCTCGAGCGCCTCACGC
TGCCTCCGGCCTGCGGACACAGCGGCGTTCGCGTCCGGGACGATTTCAGG
TACCAAGCCAATCTGTCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig158840:929..1099+

>mRNA_H-elongata_contig158840.3810.1 ID=mRNA_H-elongata_contig158840.3810.1|Name=mRNA_H-elongata_contig158840.3810.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig158840:929..1099+ (Himanthalia elongata Himel1 dioecious)
CAGGCGTTCTGCGCCTTGACGGAGCTGTCGGGAGAAGCGGCGGCCGAGGT
TAGGGGAGTGGCCTCCGAGGTATGGTTCTCTTACCTCGAGCGCCTCACGC
TGCCTCCGGCCTGCGGACACAGCGGCGTTCGCGTCCGGGACGATTTCAGG
TACCAAGCCAATCTGTCATGACAGGCGTTCTGCGCCTTGACGGAGCTGTC
GGGAGAAGCGGCGGCCGAGGTTAGGGGAGTGGCCTCCGAGGTATGGTTCT
CTTACCTCGAGCGCCTCACGCTGCCTCCGGCCTGCGGACACAGCGGCGTT
CGCGTCCGGGACGATTTCAGGTACCAAGCCAATCTGTCATGA
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