mRNA_H-elongata_contig158804.3807.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158804.3807.1
Unique NamemRNA_H-elongata_contig158804.3807.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: D8LDT7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT7_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.060e-52
Identity = 83/100 (83.00%), Postives = 86/100 (86.00%), Query Frame = 1 
Query:    1 LLPHFPPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            +LP  PP LDGSMAGDVGFDPLGLSSI+GLAGADLYWMREAELKH R+AMLA VGVLWCD  GSLPG PSG NQMKLFWEVWAEKPQ VAAG IF G  E
Sbjct:   51 MLPQ-PPLLDGSMAGDVGFDPLGLSSIAGLAGADLYWMREAELKHGRVAMLATVGVLWCDAFGSLPGFPSGVNQMKLFWEVWAEKPQYVAAGIIFCGIAE 149
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A835Z6T4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.820e-37
Identity = 64/95 (67.37%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            P +LDGS+ GDVGFDPL LS+   L G DLYW REAE+KH RIAMLAV GVL+CDQVGSLPG PSG +QM LFW+V+AEKP +V AG + V  +E
Sbjct:   47 PEKLDGSLPGDVGFDPLNLSATDEL-GLDLYWFREAEVKHGRIAMLAVAGVLFCDQVGSLPGFPSGKDQMDLFWQVFAEKPNVVGAGVVAVSILE 140
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A6T7D3U9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7D3U9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 6.400e-34
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGT--NQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            P +LDGS+AGD GFDPLGLS I G+ GADLYWMREAELKH R+AMLA VGVL+ +  GS+PG P G   +QM +FW+VWAE P  +AA   F   IE
Sbjct:   46 PKKLDGSLAGDAGFDPLGLSEIEGI-GADLYWMREAELKHARVAMLATVGVLFVEGCGSMPGFPEGKGQSQMDVFWDVWAEHPNYIAAALTFFTVIE 141
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: B7G9B9_PHATC (Protein fucoxanthin chlorophyll a/c protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9B9_PHATC)

HSP 1 Score: 122 bits (306), Expect = 8.070e-33
Identity = 57/97 (58.76%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPG--MPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            P  LDGSMAGDVGFDPLGLS+I G+ G DLYW+REAE+KHCR+AM+AV GVLW +  G  PG  M +  +Q   FW++W   PQ +A GFI  G +E
Sbjct:   45 PDLLDGSMAGDVGFDPLGLSTIEGV-GVDLYWLREAEIKHCRVAMMAVAGVLWVELFGPAPGCEMATAKSQTDAFWQLWQAHPQYIAFGFIMTGLVE 140
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S3ZSM0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSM0_9STRA)

HSP 1 Score: 122 bits (305), Expect = 9.030e-33
Identity = 58/97 (59.79%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPS--GTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            P  LDGSMAGDVGFDPLGLS I  L G DLYW+REAELKH R+AMLA  GV+W +  G LPG P   G +QM +FW+ W E P  + AG +F+  IE
Sbjct:   40 PKNLDGSMAGDVGFDPLGLSEIDDL-GVDLYWLREAELKHGRVAMLAATGVIWVEAFGPLPGWPEADGRSQMDVFWDAWEEHPNAICAGIVFITAIE 135
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2SRG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRG9_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.080e-32
Identity = 59/97 (60.82%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGT--NQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            P QLDGSMAGD GFDPLGLS I+ + G DLYWMREAELKH R+AMLA  GVL+ + +GSLPG P G   NQM +FW+VW +KP  V     F+  +E
Sbjct:   52 PAQLDGSMAGDEGFDPLGLSEINDV-GLDLYWMREAELKHGRVAMLAAAGVLFVETIGSLPGWPQGAGKNQMDIFWDVWEQKPNYVVGALCFITVLE 147
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2V5J8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5J8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.880e-32
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPS--GTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            PP LDG++AGD GFDPL LS I+ + G DLYW+REAE+KH R+AM+A  GV+W +  GSLPGMPS  G +QM +FW +WAEKP +V A  +F   IE
Sbjct:   52 PPLLDGTLAGDEGFDPLRLSEINDV-GIDLYWLREAEMKHGRVAMMAAAGVMWVELFGSLPGMPSAEGASQMDVFWTLWAEKPALVGASLVFFTIIE 147
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2YCF3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCF3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.140e-32
Identity = 56/97 (57.73%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGT--NQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            P  LDGSMAGD+GFDPLGLS I+G+ G DLYW+REAE+KHCR+AM+AVVG +W +  G  PG  + T  NQM  FW++W   PQ + AG IF+   E
Sbjct:   23 PELLDGSMAGDLGFDPLGLSEINGV-GVDLYWLREAEIKHCRVAMMAVVGNVWVEAFGPAPGCEAATAKNQMDSFWQLWKVHPQYIVAGLIFIMIAE 118
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BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: K8YPQ7_NANGC (Light-harvesting complex I chlorophyll a/b binding protein 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YPQ7_NANGC)

HSP 1 Score: 120 bits (300), Expect = 7.170e-32
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            P  LDGSMAGDVGFDPLGLS I+ + G DLYW+REAELKHCR+ M+A  G+L+ + VG  PG PS  +QM  FW V+AEKP +V A  + +  +E
Sbjct:   53 PKNLDGSMAGDVGFDPLGLSEINEV-GIDLYWLREAELKHCRLGMMAAAGILFVEAVGPAPGFPSTKSQMDAFWTVYAEKPSLVGAALVAIAILE 146
[Close]
BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Match: A0A7S2SRE3_9STRA (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2SRE3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.880e-32
Identity = 58/97 (59.79%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:   16 PPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAMLAVVGVLWCDQVGSLPGMPSGTN--QMKLFWEVWAEKPQIVAAGFIFVGFIE 300
            PP LDGSMAGDVGFDPLGLS+I  + G DLYWMREAE+KHCR+AM+AVVG+L  +  G  PG  + T   QM  FW++W   PQ +AAG I +  IE
Sbjct:   43 PPLLDGSMAGDVGFDPLGLSNIDDV-GIDLYWMREAEIKHCRLAMMAVVGILQVEAFGPAPGCEAATAKCQMDAFWQIWNSHPQYIAAGLIMIMLIE 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158804.3807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDT7_ECTSI2.060e-5283.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A835Z6T4_9STRA6.820e-3767.37Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A6T7D3U9_9STRA6.400e-3462.89Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B7G9B9_PHATC8.070e-3358.76Protein fucoxanthin chlorophyll a/c protein n=3 Ta... [more]
A0A7S3ZSM0_9STRA9.030e-3359.79Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2SRG9_9STRA1.080e-3260.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V5J8_9STRA2.880e-3258.76Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2YCF3_9STRA5.140e-3257.73Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
K8YPQ7_NANGC7.170e-3257.89Light-harvesting complex I chlorophyll a/b binding... [more]
A0A7S2SRE3_9STRA9.880e-3259.79Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158804contigH-elongata_contig158804:1001..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.6e-42
Seed eggNOG ortholog2880.D8LDT7
KEGG koko:K08907,ko:K08910,ko:K08911
KEGG Pathwayko00196,map00196
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009521,GO:0009522,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009782,GO:0009941,GO:0009987,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0046983,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:0098796,GO:1901363
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BTIX@1,2S212@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-08_003290.1
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929935.5267048-CDS-H-elongata_contig158804:1000..13001622929935.5267048-CDS-H-elongata_contig158804:1000..1300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158804 1001..1300 +
1691679214.1446383-CDS-H-elongata_contig158804:1000..13001691679214.1446383-CDS-H-elongata_contig158804:1000..1300Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158804 1001..1300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158804.3807.1prot_H-elongata_contig158804.3807.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158804 1001..1300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158804.3807.1

>prot_H-elongata_contig158804.3807.1 ID=prot_H-elongata_contig158804.3807.1|Name=mRNA_H-elongata_contig158804.3807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
LLPHFPPQLDGSMAGDVGFDPLGLSSISGLAGADLYWMREAELKHCRIAM
LAVVGVLWCDQVGSLPGMPSGTNQMKLFWEVWAEKPQIVAAGFIFVGFIE
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mRNA from alignment at H-elongata_contig158804:1001..1300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158804.3807.1 ID=mRNA_H-elongata_contig158804.3807.1|Name=mRNA_H-elongata_contig158804.3807.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig158804:1001..1300+ (Himanthalia elongata Himel1 dioecious)
CTGCTCCCGCATTTCCCGCCCCAGCTCGACGGAAGCATGGCCGGCGACGT
CGGCTTCGACCCTCTGGGACTCTCAAGCATCTCTGGCCTTGCGGGCGCGG
ACCTTTACTGGATGCGCGAGGCCGAGCTCAAGCACTGCCGAATCGCCATG
CTTGCGGTGGTGGGCGTTCTCTGGTGCGACCAGGTCGGCTCCCTCCCAGG
GATGCCGTCAGGTACAAACCAGATGAAGCTGTTCTGGGAGGTTTGGGCGG
AGAAGCCGCAGATCGTCGCTGCCGGGTTCATCTTCGTCGGTTTCATCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig158804:1001..1300+

>mRNA_H-elongata_contig158804.3807.1 ID=mRNA_H-elongata_contig158804.3807.1|Name=mRNA_H-elongata_contig158804.3807.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig158804:1001..1300+ (Himanthalia elongata Himel1 dioecious)
CTGCTCCCGCATTTCCCGCCCCAGCTCGACGGAAGCATGGCCGGCGACGT
CGGCTTCGACCCTCTGGGACTCTCAAGCATCTCTGGCCTTGCGGGCGCGG
ACCTTTACTGGATGCGCGAGGCCGAGCTCAAGCACTGCCGAATCGCCATG
CTTGCGGTGGTGGGCGTTCTCTGGTGCGACCAGGTCGGCTCCCTCCCAGG
GATGCCGTCAGGTACAAACCAGATGAAGCTGTTCTGGGAGGTTTGGGCGG
AGAAGCCGCAGATCGTCGCTGCCGGGTTCATCTTCGTCGGTTTCATCGAA
CTGCTCCCGCATTTCCCGCCCCAGCTCGACGGAAGCATGGCCGGCGACGT
CGGCTTCGACCCTCTGGGACTCTCAAGCATCTCTGGCCTTGCGGGCGCGG
ACCTTTACTGGATGCGCGAGGCCGAGCTCAAGCACTGCCGAATCGCCATG
CTTGCGGTGGTGGGCGTTCTCTGGTGCGACCAGGTCGGCTCCCTCCCAGG
GATGCCGTCAGGTACAAACCAGATGAAGCTGTTCTGGGAGGTTTGGGCGG
AGAAGCCGCAGATCGTCGCTGCCGGGTTCATCTTCGTCGGTTTCATCGAA
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