mRNA_H-elongata_contig15872.3799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15872.3799.1
Unique NamemRNA_H-elongata_contig15872.3799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15872.3799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15872contigH-elongata_contig15872:2018..2446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.7791955-CDS-H-elongata_contig15872:2017..24461622929934.7791955-CDS-H-elongata_contig15872:2017..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15872 2018..2446 +
1691679213.91035-CDS-H-elongata_contig15872:2017..24461691679213.91035-CDS-H-elongata_contig15872:2017..2446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15872 2018..2446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15872.3799.1prot_H-elongata_contig15872.3799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15872 2018..2446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15872.3799.1

>prot_H-elongata_contig15872.3799.1 ID=prot_H-elongata_contig15872.3799.1|Name=mRNA_H-elongata_contig15872.3799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
VESKPPTTDSRRDRYTANSLNSNPFFGQGISIRSLLTSRGRGAGAHLHDL
PVAMFPFGGLISARITRVMTRVRVTNSQPKCYLSYLCQLCQLTTGPRRER
SFLSDSDSFEHCTANALQTKTNESNERGRLPRFGLVELRDASW
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mRNA from alignment at H-elongata_contig15872:2018..2446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15872.3799.1 ID=mRNA_H-elongata_contig15872.3799.1|Name=mRNA_H-elongata_contig15872.3799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig15872:2018..2446+ (Himanthalia elongata Himel1 dioecious)
GTTGAGTCAAAACCACCCACGACTGATAGCCGACGAGATCGGTACACGGC
CAACTCCTTAAACTCTAATCCGTTTTTTGGTCAAGGCATCAGCATCCGTT
CGTTGCTCACTTCCAGAGGCAGGGGGGCTGGCGCCCATTTACACGACTTA
CCGGTCGCTATGTTCCCTTTCGGTGGGCTTATCTCCGCACGAATAACCCG
AGTGATGACCAGAGTCAGAGTCACGAATTCTCAGCCTAAATGCTACTTGA
GCTACTTATGTCAACTATGTCAACTGACGACGGGCCCTCGCCGCGAGCGT
AGCTTCTTGAGCGACAGCGACAGCTTTGAACATTGCACAGCTAACGCTCT
ACAAACAAAAACAAACGAGAGCAACGAGAGGGGAAGACTGCCTAGATTCG
GGTTAGTGGAGCTCAGAGACGCCTCTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig15872:2018..2446+

>mRNA_H-elongata_contig15872.3799.1 ID=mRNA_H-elongata_contig15872.3799.1|Name=mRNA_H-elongata_contig15872.3799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig15872:2018..2446+ (Himanthalia elongata Himel1 dioecious)
GTTGAGTCAAAACCACCCACGACTGATAGCCGACGAGATCGGTACACGGC
CAACTCCTTAAACTCTAATCCGTTTTTTGGTCAAGGCATCAGCATCCGTT
CGTTGCTCACTTCCAGAGGCAGGGGGGCTGGCGCCCATTTACACGACTTA
CCGGTCGCTATGTTCCCTTTCGGTGGGCTTATCTCCGCACGAATAACCCG
AGTGATGACCAGAGTCAGAGTCACGAATTCTCAGCCTAAATGCTACTTGA
GCTACTTATGTCAACTATGTCAACTGACGACGGGCCCTCGCCGCGAGCGT
AGCTTCTTGAGCGACAGCGACAGCTTTGAACATTGCACAGCTAACGCTCT
ACAAACAAAAACAAACGAGAGCAACGAGAGGGGAAGACTGCCTAGATTCG
GGTTAGTGGAGCTCAGAGACGCCTCTTGGGTTGAGTCAAAACCACCCACG
ACTGATAGCCGACGAGATCGGTACACGGCCAACTCCTTAAACTCTAATCC
GTTTTTTGGTCAAGGCATCAGCATCCGTTCGTTGCTCACTTCCAGAGGCA
GGGGGGCTGGCGCCCATTTACACGACTTACCGGTCGCTATGTTCCCTTTC
GGTGGGCTTATCTCCGCACGAATAACCCGAGTGATGACCAGAGTCAGAGT
CACGAATTCTCAGCCTAAATGCTACTTGAGCTACTTATGTCAACTATGTC
AACTGACGACGGGCCCTCGCCGCGAGCGTAGCTTCTTGAGCGACAGCGAC
AGCTTTGAACATTGCACAGCTAACGCTCTACAAACAAAAACAAACGAGAG
CAACGAGAGGGGAAGACTGCCTAGATTCGGGTTAGTGGAGCTCAGAGACG
CCTCTTGG
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