prot_H-elongata_contig158681.3798.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig158681.3798.1
Unique Name	prot_H-elongata_contig158681.3798.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	112

Homology

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: D8LRA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRA9_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 7.940e-51
Identity = 89/112 (79.46%), Postives = 98/112 (87.50%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            E+FGAF+KLDGYRKHGLVHCSQMASYRVEDVTDVCKVGD VY KVIEV D A+PREQRI LSMKLVNQ+ G DLD SNAEAETDAQR++P G  G+R  V+LEAV+NTT TK
Sbjct:  249 ETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGG-GDRAPVQLEAVFNTTCTK 359

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A0S7HUY9_9TELE (NO40 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HUY9_9TELE)

HSP 1 Score: 100 bits (248), Expect = 1.200e-24
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            +S+GAFV+L GYRK GLVH S+M++ RVE  +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYRKEGLVHVSEMSASRVESASEIVDVGEHVWIKVIGCEIQGD--KVKLSFSMKAVNQGTGQDLDPNNVRADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A0S7HUY4_9TELE (NO40 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HUY4_9TELE)

HSP 1 Score: 100 bits (248), Expect = 4.310e-24
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            +S+GAFV+L GYRK GLVH S+M++ RVE  +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYRKEGLVHVSEMSASRVESASEIVDVGEHVWIKVIGCEIQGD--KVKLSFSMKAVNQGTGQDLDPNNVRADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A3Q0SWB1_AMPCI (Zinc finger, CCHC domain containing 17 n=2 Tax=Cichlidae TaxID=8113 RepID=A0A3Q0SWB1_AMPCI)

HSP 1 Score: 96.7 bits (239), Expect = 2.820e-23
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKP-RGAHGERPVVKLEAVYNTTSTK 112
            +++GAFV+L GY+K GLVH S+M++ RVE  +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  AE DA+RRK  R     R  + LEAV NTT +K
Sbjct:   27 QTYGAFVRLPGYKKEGLVHVSEMSASRVESASEIVDVGEHVWIKVI--GREIQGDKVKLSFSMKAVNQGTGRDLDPNNVNAEQDARRRKQFRDQTSNR--ITLEAVLNTTCSK 135

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A3B5MYF8_9TELE (Zinc finger, CCHC domain containing 17 n=2 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5MYF8_9TELE)

HSP 1 Score: 98.6 bits (244), Expect = 4.180e-23
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            +S+GAFV+L GY+K GLVH S+M++ RVE+ +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEHVWIKVIGCEIQGD--KVKLSFSMKAVNQGTGQDLDPNNVMADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140

[Close]

BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A1A7YY55_9TELE (Zinc finger, CCHC domain containing 17 n=2 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YY55_9TELE)

HSP 1 Score: 97.4 bits (241), Expect = 4.830e-23
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            +++GAFV+L GYRK GLVH S+M++ RVE  +++  VG+ V++KVI      +  + ++  SMK VNQ TG DLD +N +AE DA+RR+     G   +  LEAV NTT +K
Sbjct:   32 QTYGAFVRLPGYRKEGLVHVSEMSATRVESASEIVDVGEQVWIKVI--GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNRIT-LEAVLNTTCSK 140

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A096LVJ9_POEFO (Zinc finger CCHC-type containing 17 n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A096LVJ9_POEFO)

HSP 1 Score: 98.2 bits (243), Expect = 5.530e-23
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            +S+GAFV+L GY+K GLVH S+M++ RVE+ +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYKKEGLVHVSEMSATRVENASEIVDVGEHVWIKVI--GREIQGDKVKMSFSMKAVNQGTGQDLDPNNVMADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: UPI001EE5E8D7 (nucleolar protein of 40 kDa-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5E8D7)

HSP 1 Score: 97.8 bits (242), Expect = 1.310e-22
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNT 108
            +++G FVK+ G RK GLVH SQM+  RVED +++  + + VY KVI +    E   Q+IGLSMK VNQ+TG DLD +N +   + +RRK +G   ERP ++L AVY+T
Sbjct:   55 QNYGVFVKIPGCRKQGLVHKSQMSKARVEDPSEMVSLRERVYCKVISI----EGEHQKIGLSMKYVNQTTGQDLDSNNVQGSMEDRRRK-QGFSSERPKIELGAVYDT 157

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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A3P9NDW0_POERE (Zinc finger CCHC-type containing 17 n=11 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3P9NDW0_POERE)

HSP 1 Score: 98.6 bits (244), Expect = 1.400e-22
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            +S+GAFV+L GY+K GLVH S+M++ RVE+ +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   91 QSYGAFVRLPGYKKEGLVHVSEMSATRVENASEIVDVGEHVWIKVI--GREIQGDKVKMSFSMKAVNQGTGQDLDPNNVTADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 199

[Close]

BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A1A8VH18_NOTFU (Zinc finger, CCHC domain containing 17 n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8VH18_NOTFU)

HSP 1 Score: 97.4 bits (241), Expect = 1.430e-22
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 0

Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 112
            +++GAFV+L GYRK GLVH S+M++ RVE  +++  VG+ V++KVI      +  + ++  SMK VNQ TG DLD +N +AE DA+RR+     G   +  LEAV NTT +K
Sbjct:   32 QTYGAFVRLPGYRKEGLVHVSEMSASRVESASEIVDVGEQVWIKVI--GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNRIT-LEAVLNTTCSK 140

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot

BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRA9_ECTSI	7.940e-51	79.46	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A0S7HUY9_9TELE	1.200e-24	47.32	NO40 n=1 Tax=Poeciliopsis prolifica TaxID=188132 R...	[more]
A0A0S7HUY4_9TELE	4.310e-24	47.32	NO40 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax...	[more]
A0A3Q0SWB1_AMPCI	2.820e-23	46.90	Zinc finger, CCHC domain containing 17 n=2 Tax=Cic...	[more]
A0A3B5MYF8_9TELE	4.180e-23	46.43	Zinc finger, CCHC domain containing 17 n=2 Tax=Xip...	[more]
A0A1A7YY55_9TELE	4.830e-23	45.54	Zinc finger, CCHC domain containing 17 n=2 Tax=Not...	[more]
A0A096LVJ9_POEFO	5.530e-23	46.43	Zinc finger CCHC-type containing 17 n=1 Tax=Poecil...	[more]
UPI001EE5E8D7	1.310e-22	48.15	nucleolar protein of 40 kDa-like n=2 Tax=Haliotis ...	[more]
A0A3P9NDW0_POERE	1.400e-22	46.43	Zinc finger CCHC-type containing 17 n=11 Tax=Cypri...	[more]
A0A1A8VH18_NOTFU	1.430e-22	45.54	Zinc finger, CCHC domain containing 17 n=8 Tax=Not...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 2..51 e-value: 1.7E-11 score: 44.3
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 1..64 score: 14.599
None	No IPR available	GENE3D	2.40.50.140		coord: 1..75 e-value: 9.7E-22 score: 78.9
None	No IPR available	PANTHER	PTHR15838:SF1	NUCLEOLAR PROTEIN OF 40 KDA	coord: 1..112
IPR037320	Nucleolar protein of 40kDa	PANTHER	PTHR15838	FAMILY NOT NAMED	coord: 1..112
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..67

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig158681	contig	H-elongata_contig158681:87..1384 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig158681.3798.1	mRNA_H-elongata_contig158681.3798.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig158681 87..1384 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig158681.3798.1 ID=prot_H-elongata_contig158681.3798.1|Name=mRNA_H-elongata_contig158681.3798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVAD
AAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVV
KLEAVYNTTSTK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003029	S1_domain
IPR037320	pNO40
IPR012340	NA-bd_OB-fold