mRNA_H-elongata_contig158681.3798.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158681.3798.1
Unique NamemRNA_H-elongata_contig158681.3798.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: D8LRA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRA9_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 7.940e-51
Identity = 89/112 (79.46%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            E+FGAF+KLDGYRKHGLVHCSQMASYRVEDVTDVCKVGD VY KVIEV D A+PREQRI LSMKLVNQ+ G DLD SNAEAETDAQR++P G  G+R  V+LEAV+NTT TK
Sbjct:  249 ETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGG-GDRAPVQLEAVFNTTCTK 359
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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A0S7HUY9_9TELE (NO40 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HUY9_9TELE)

HSP 1 Score: 100 bits (248), Expect = 1.200e-24
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            +S+GAFV+L GYRK GLVH S+M++ RVE  +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYRKEGLVHVSEMSASRVESASEIVDVGEHVWIKVIGCEIQGD--KVKLSFSMKAVNQGTGQDLDPNNVRADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140
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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A0S7HUY4_9TELE (NO40 (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HUY4_9TELE)

HSP 1 Score: 100 bits (248), Expect = 4.310e-24
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            +S+GAFV+L GYRK GLVH S+M++ RVE  +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYRKEGLVHVSEMSASRVESASEIVDVGEHVWIKVIGCEIQGD--KVKLSFSMKAVNQGTGQDLDPNNVRADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140
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BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A3Q0SWB1_AMPCI (Zinc finger, CCHC domain containing 17 n=2 Tax=Cichlidae TaxID=8113 RepID=A0A3Q0SWB1_AMPCI)

HSP 1 Score: 96.7 bits (239), Expect = 2.820e-23
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKP-RGAHGERPVVKLEAVYNTTSTK 336
            +++GAFV+L GY+K GLVH S+M++ RVE  +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  AE DA+RRK  R     R  + LEAV NTT +K
Sbjct:   27 QTYGAFVRLPGYKKEGLVHVSEMSASRVESASEIVDVGEHVWIKVI--GREIQGDKVKLSFSMKAVNQGTGRDLDPNNVNAEQDARRRKQFRDQTSNR--ITLEAVLNTTCSK 135
[Close]
BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A3B5MYF8_9TELE (Zinc finger, CCHC domain containing 17 n=2 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5MYF8_9TELE)

HSP 1 Score: 98.6 bits (244), Expect = 4.180e-23
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            +S+GAFV+L GY+K GLVH S+M++ RVE+ +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDVGEHVWIKVIGCEIQGD--KVKLSFSMKAVNQGTGQDLDPNNVMADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140
[Close]
BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A1A7YY55_9TELE (Zinc finger, CCHC domain containing 17 n=2 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YY55_9TELE)

HSP 1 Score: 97.4 bits (241), Expect = 4.830e-23
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            +++GAFV+L GYRK GLVH S+M++ RVE  +++  VG+ V++KVI      +  + ++  SMK VNQ TG DLD +N +AE DA+RR+     G   +  LEAV NTT +K
Sbjct:   32 QTYGAFVRLPGYRKEGLVHVSEMSATRVESASEIVDVGEQVWIKVI--GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNRIT-LEAVLNTTCSK 140
[Close]
BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A096LVJ9_POEFO (Zinc finger CCHC-type containing 17 n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A096LVJ9_POEFO)

HSP 1 Score: 98.2 bits (243), Expect = 5.530e-23
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            +S+GAFV+L GY+K GLVH S+M++ RVE+ +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   32 QSYGAFVRLPGYKKEGLVHVSEMSATRVENASEIVDVGEHVWIKVI--GREIQGDKVKMSFSMKAVNQGTGQDLDPNNVMADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 140
[Close]
BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: UPI001EE5E8D7 (nucleolar protein of 40 kDa-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5E8D7)

HSP 1 Score: 97.8 bits (242), Expect = 1.310e-22
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNT 324
            +++G FVK+ G RK GLVH SQM+  RVED +++  + + VY KVI +    E   Q+IGLSMK VNQ+TG DLD +N +   + +RRK +G   ERP ++L AVY+T
Sbjct:   55 QNYGVFVKIPGCRKQGLVHKSQMSKARVEDPSEMVSLRERVYCKVISI----EGEHQKIGLSMKYVNQTTGQDLDSNNVQGSMEDRRRK-QGFSSERPKIELGAVYDT 157
[Close]
BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A3P9NDW0_POERE (Zinc finger CCHC-type containing 17 n=11 Tax=Cyprinodontoidei TaxID=8087 RepID=A0A3P9NDW0_POERE)

HSP 1 Score: 98.6 bits (244), Expect = 1.400e-22
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            +S+GAFV+L GY+K GLVH S+M++ RVE+ +++  VG+HV++KVI      +  + ++  SMK VNQ TG DLD +N  A+ DA+RRK    H    +  LEAV NTT +K
Sbjct:   91 QSYGAFVRLPGYKKEGLVHVSEMSATRVENASEIVDVGEHVWIKVI--GREIQGDKVKMSFSMKAVNQGTGQDLDPNNVTADQDARRRKQFRDHTSNRIT-LEAVLNTTCSK 199
[Close]
BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Match: A0A1A8VH18_NOTFU (Zinc finger, CCHC domain containing 17 n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8VH18_NOTFU)

HSP 1 Score: 97.4 bits (241), Expect = 1.430e-22
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    1 ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVADAAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVVKLEAVYNTTSTK 336
            +++GAFV+L GYRK GLVH S+M++ RVE  +++  VG+ V++KVI      +  + ++  SMK VNQ TG DLD +N +AE DA+RR+     G   +  LEAV NTT +K
Sbjct:   32 QTYGAFVRLPGYRKEGLVHVSEMSASRVESASEIVDVGEQVWIKVI--GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNRIT-LEAVLNTTCSK 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158681.3798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA9_ECTSI7.940e-5179.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0S7HUY9_9TELE1.200e-2447.32NO40 n=1 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A0S7HUY4_9TELE4.310e-2447.32NO40 (Fragment) n=2 Tax=Poeciliopsis prolifica Tax... [more]
A0A3Q0SWB1_AMPCI2.820e-2346.90Zinc finger, CCHC domain containing 17 n=2 Tax=Cic... [more]
A0A3B5MYF8_9TELE4.180e-2346.43Zinc finger, CCHC domain containing 17 n=2 Tax=Xip... [more]
A0A1A7YY55_9TELE4.830e-2345.54Zinc finger, CCHC domain containing 17 n=2 Tax=Not... [more]
A0A096LVJ9_POEFO5.530e-2346.43Zinc finger CCHC-type containing 17 n=1 Tax=Poecil... [more]
UPI001EE5E8D71.310e-2248.15nucleolar protein of 40 kDa-like n=2 Tax=Haliotis ... [more]
A0A3P9NDW0_POERE1.400e-2246.43Zinc finger CCHC-type containing 17 n=11 Tax=Cypri... [more]
A0A1A8VH18_NOTFU1.430e-2245.54Zinc finger, CCHC domain containing 17 n=8 Tax=Not... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158681contigH-elongata_contig158681:87..1384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue5.1e-43
Seed eggNOG ortholog2880.D8LRA9
KEGG koko:K02357
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA-binding domain, S1
Ec32 orthologEc-06_003210.1
Exons3
Model size336
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158681.3798.1prot_H-elongata_contig158681.3798.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158681 87..1384 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.6924644-CDS-H-elongata_contig158681:86..1701622929934.6924644-CDS-H-elongata_contig158681:86..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158681 87..170 -
1691679213.881928-CDS-H-elongata_contig158681:86..1701691679213.881928-CDS-H-elongata_contig158681:86..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158681 87..170 -
1622929934.7137022-CDS-H-elongata_contig158681:690..8101622929934.7137022-CDS-H-elongata_contig158681:690..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158681 691..810 -
1691679213.8945994-CDS-H-elongata_contig158681:690..8101691679213.8945994-CDS-H-elongata_contig158681:690..810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158681 691..810 -
1622929934.7302527-CDS-H-elongata_contig158681:1252..13841622929934.7302527-CDS-H-elongata_contig158681:1252..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158681 1253..1384 -
1691679213.9022832-CDS-H-elongata_contig158681:1252..13841691679213.9022832-CDS-H-elongata_contig158681:1252..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158681 1253..1384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158681.3798.1

>prot_H-elongata_contig158681.3798.1 ID=prot_H-elongata_contig158681.3798.1|Name=mRNA_H-elongata_contig158681.3798.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
ESFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDHVYVKVIEVAD
AAEPREQRIGLSMKLVNQSTGADLDVSNAEAETDAQRRKPRGAHGERPVV
KLEAVYNTTSTK
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mRNA from alignment at H-elongata_contig158681:87..1384-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158681.3798.1 ID=mRNA_H-elongata_contig158681.3798.1|Name=mRNA_H-elongata_contig158681.3798.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1298bp|location=Sequence derived from alignment at H-elongata_contig158681:87..1384- (Himanthalia elongata Himel1 dioecious)
GAATCTTTCGGCGCGTTCGTGAAGCTGGACGGTTATCGCAAGCACGGCCT
GGTACACTGCAGTCAGATGGCTTCGTACAGGGTAGAAGACGTTACCGACG
TGTGTAAGGTCGGCGACCACGTGTACGTGAAGGTAAGCACAATGTATCCC
CCCCCTCCCCCTGCTCTCTTCTCTTCTCTTCCAAGGTTTTCACGGCATGA
TCCTTGTGTGGTGGAGCATTCTCCATCCAATCGTTTTCCACCTGTCGTTG
ATAAGGTCGGACATGACCTCCTGTAGTCCTCGAACGGACAAAGGTCAAAA
TCCTGTCAGTGGAACACTGTCCGTGGGTACGATTTCTCCCCTCTTCCTCT
TTTTTGGGAGGCAAATATCCGAACAAATTAATATTCCAAAATGCACCAGG
TCATGAGATAATGTGAAACTCTGCGCCTCTGCCGCGGATCGTGTTTTGCC
ACCCATAAGGATGCCTTATGTATTAGTAGTTGCTTGACGTTTTTCCTTCT
GTCCTAAGATCATTTCATGACGCCTCCCTCCCACCCCCCTTTCCCTTCTG
ATGAAACGCCTTTGGTTTTATTAGGTGATCGAGGTTGCCGACGCGGCGGA
ACCGCGAGAGCAGCGCATAGGTCTTTCCATGAAGCTGGTGAACCAGTCAA
CCGGTGCTGATCTCGACGTCTCCAACGCGGAGGCGGAGACCGATGTAGGT
CTCCTTGTTGGATCCTCTGATTGTTTGTGTTTTGTGTTTTATCATCCCTC
GTGCCGTCTCCCGGTGCTTGAAAGGTATTCGTGTGCTATACGCTTGTGTT
TTATTTTTGAGTGGTGGTTTCTCTGTCTTCAAACCCCTCTCGCGGCCGGT
AAGATGCTGAACAAACGTGGCAAGAGTCGAAAAAAATTACCATCATTAGA
ATAATTTGACGCTTGGACGGTCGCTAGCAGCAGCCCCGGCAGCAACGTTT
TAGGCAATCCTATTCCTACACTCTGGAGAGATTAAATTTTGAGAGCGAGA
GGAACCTAGCGTGGTGGCAATGGTGTGTTAGTTCGGAGGCGGGCATTATA
AGGAAAGGTGTCGCATTGTGACCGCGTGTGCCGTCATCATATGAACTGCA
CCATATAATCTTGACCGCGCTTCTTCTTGCTCAGCGTGTCTCTCTCCCCC
CCCCCACCCGTTCCCCGCCTACCCTACTATGGGAATCGTTGCGTTCTCGT
CTTGGTGTGGGCAGGCGCAACGTCGCAAGCCCAGGGGGGCTCATGGCGAA
CGCCCCGTCGTGAAGCTTGAAGCGGTGTACAACACTACCTCCACGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig158681:87..1384-

>mRNA_H-elongata_contig158681.3798.1 ID=mRNA_H-elongata_contig158681.3798.1|Name=mRNA_H-elongata_contig158681.3798.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig158681:87..1384- (Himanthalia elongata Himel1 dioecious)
GAATCTTTCGGCGCGTTCGTGAAGCTGGACGGTTATCGCAAGCACGGCCT
GGTACACTGCAGTCAGATGGCTTCGTACAGGGTAGAAGACGTTACCGACG
TGTGTAAGGTCGGCGACCACGTGTACGTGAAGGAATCTTTCGGCGCGTTC
GTGAAGCTGGACGGTTATCGCAAGCACGGCCTGGTACACTGCAGTCAGAT
GGCTTCGTACAGGGTAGAAGACGTTACCGACGTGTGTAAGGTCGGCGACC
ACGTGTACGTGAAGGTGATCGAGGTTGCCGACGCGGCGGAACCGCGAGAG
CAGCGCATAGGTCTTTCCATGAAGCTGGTGAACCAGTCAACCGGTGCTGA
TCTCGACGTCTCCAACGCGGAGGCGGAGACCGATGTGATCGAGGTTGCCG
ACGCGGCGGAACCGCGAGAGCAGCGCATAGGTCTTTCCATGAAGCTGGTG
AACCAGTCAACCGGTGCTGATCTCGACGTCTCCAACGCGGAGGCGGAGAC
CGATGCGCAACGTCGCAAGCCCAGGGGGGCTCATGGCGAACGCCCCGTCG
TGAAGCTTGAAGCGGTGTACAACACTACCTCCACGAAGGCGCAACGTCGC
AAGCCCAGGGGGGCTCATGGCGAACGCCCCGTCGTGAAGCTTGAAGCGGT
GTACAACACTACCTCCACGAAG
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