mRNA_H-elongata_contig15865.3795.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15865.3795.1
Unique NamemRNA_H-elongata_contig15865.3795.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: UPI001C16239B (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C16239B)

HSP 1 Score: 57.4 bits (137), Expect = 3.710e-8
Identity = 26/73 (35.62%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-KKHSSVPQCVDP----DELAREWQYAK 204
            L+ RF+   ++++  +  PK  P++E+ L  YG++E+K+L EH+G +KH S  + V P     E  +EWQ  K
Sbjct:  138 LQARFSHNDLYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGKPVQPLINSSECKKEWQMVK 210
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BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: UPI001C1A0AFA (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1A0AFA)

HSP 1 Score: 55.5 bits (132), Expect = 2.230e-7
Identity = 24/73 (32.88%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-----KKHSSVPQCVDPDELAREWQYAK 204
            ++ RF +  ++ +  +F PK  PI+EN+L  YG D+IK L ++YG      + + V + ++ D + +EW+ AK
Sbjct:  185 IKSRFPQSDLYHSFRIFDPKLLPIKENELGNYGNDDIKKLSDYYGVDKMDDEGNIVEKIINSDNVKQEWKVAK 257
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BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: U9SIY2_RHIID (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9SIY2_RHIID)

HSP 1 Score: 55.1 bits (131), Expect = 3.140e-7
Identity = 24/73 (32.88%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-KKHSS----VPQCVDPDELAREWQYAK 204
            L+ RF    ++++  +  PK  P++E+ L  YG++E+K++ EH+G +KH S    V   ++  E  +EWQ  K
Sbjct:  121 LQARFPCNDLYDSMKILDPKELPLQESALSSYGIEELKLICEHFGNQKHKSNGIPVQPLINSSECKKEWQMVK 193
[Close]
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: UPI001C1C1B13 (Hypothetical protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1C1B13)

HSP 1 Score: 55.1 bits (131), Expect = 3.650e-7
Identity = 23/71 (32.39%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-----KKHSSVPQCVDPDELAREWQY 198
            ++ RF +  ++ +  +F PK  PI+EN+L  YG D+IK L ++YG      + + V + ++ D + +EW+Y
Sbjct:  299 IKSRFPQSDLYHSFRIFDPKLLPIKENELGNYGNDDIKKLSDYYGVDKMDDEGNIVEKIINSDNVKQEWKY 369
[Close]
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: A0A2N0QRW7_9GLOM (DUF4371 domain-containing protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0QRW7_9GLOM)

HSP 1 Score: 55.1 bits (131), Expect = 3.700e-7
Identity = 24/73 (32.88%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-KKHSS----VPQCVDPDELAREWQYAK 204
            L+ RF    ++++  +  PK  P++E+ L  YG++E+K++ EH+G +KH S    V   ++  E  +EWQ  K
Sbjct:  336 LQARFPCNDLYDSMKILDPKELPLQESALSSYGIEELKLIFEHFGNQKHKSNGIPVQPLINSSECKKEWQMVK 408
[Close]
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: UPI001C17B8B0 (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C17B8B0)

HSP 1 Score: 55.1 bits (131), Expect = 3.730e-7
Identity = 24/73 (32.88%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-KKHSS----VPQCVDPDELAREWQYAK 204
            L+ RF    ++++  +  PK  P++E+ L  YG++E+K++ EH+G +KH S    V   ++  E  +EWQ  K
Sbjct:  423 LQARFPCNDLYDSMKILDPKELPLQESALSSYGIEELKLIFEHFGNQKHKSNGIPVQPLINSSECKKEWQMVK 495
[Close]
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: A0A2Z6R8B9_9GLOM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R8B9_9GLOM)

HSP 1 Score: 52.8 bits (125), Expect = 2.420e-6
Identity = 24/73 (32.88%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-KKHSS----VPQCVDPDELAREWQYAK 204
            L+  F    ++++  +  PK  P++E+ L  YG++E+K+L EH+G +KH S    V   ++  E  +EWQ  K
Sbjct:  274 LQACFPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVK 346
[Close]
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: A0A8H3R5N1_9GLOM (WD repeat protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3R5N1_9GLOM)

HSP 1 Score: 52.8 bits (125), Expect = 2.470e-6
Identity = 24/73 (32.88%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-KKHSS----VPQCVDPDELAREWQYAK 204
            L+  F    ++++  +  PK  P++E+ L  YG++E+K+L EH+G +KH S    V   ++  E  +EWQ  K
Sbjct:  274 LQACFPYNELYDSMKILDPKELPLQESALSSYGIEELKLLCEHFGNQKHKSNGTPVQPLINSSECKKEWQMVK 346
[Close]
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: A0A2N0NFX0_9GLOM (Uncharacterized protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N0NFX0_9GLOM)

HSP 1 Score: 50.4 bits (119), Expect = 4.010e-6
Identity = 23/73 (31.51%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-----KKHSSVPQCVDPDELAREWQYAK 204
            ++ RF +  ++ +  +F  K  PI+EN+L  YG D+IK L ++YG      + + V + ++ D + +EW+ AK
Sbjct:   43 IKSRFPQSDLYHSFRIFDLKLSPIKENELGNYGNDDIKKLSDYYGVDKMDDEGNIVEKIINGDNVKQEWKVAK 115
[Close]
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Match: A0A015JTY0_RHIIW (Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015JTY0_RHIIW)

HSP 1 Score: 50.4 bits (119), Expect = 4.980e-6
Identity = 23/73 (31.51%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYG-----KKHSSVPQCVDPDELAREWQYAK 204
            ++ RF +  ++ +  +F  K  PI+EN+L  YG D+IK L ++YG      + + V + ++ D + +EW+ AK
Sbjct:   56 IKSRFPQSDLYHSFRIFDLKLSPIKENELGNYGNDDIKKLSDYYGVDKMDDEGNIVEKIINGDNVKQEWKVAK 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15865.3795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
UPI001C16239B3.710e-835.62Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C1A0AFA2.230e-732.88Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
U9SIY2_RHIID3.140e-732.88Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]
UPI001C1C1B133.650e-732.39Hypothetical protein n=2 Tax=Rhizophagus irregular... [more]
A0A2N0QRW7_9GLOM3.700e-732.88DUF4371 domain-containing protein n=3 Tax=Rhizopha... [more]
UPI001C17B8B03.730e-732.88Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
A0A2Z6R8B9_9GLOM2.420e-632.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Rh... [more]
A0A8H3R5N1_9GLOM2.470e-632.88WD repeat protein n=1 Tax=Rhizophagus clarus TaxID... [more]
A0A2N0NFX0_9GLOM4.010e-631.51Uncharacterized protein n=2 Tax=Rhizophagus irregu... [more]
A0A015JTY0_RHIIW4.980e-631.51Uncharacterized protein n=1 Tax=Rhizophagus irregu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15865contigH-elongata_contig15865:2186..2389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.341966-CDS-H-elongata_contig15865:2185..23891622929934.341966-CDS-H-elongata_contig15865:2185..2389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15865 2186..2389 +
1691679213.7373147-CDS-H-elongata_contig15865:2185..23891691679213.7373147-CDS-H-elongata_contig15865:2185..2389Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15865 2186..2389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15865.3795.1prot_H-elongata_contig15865.3795.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15865 2186..2389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15865.3795.1

>prot_H-elongata_contig15865.3795.1 ID=prot_H-elongata_contig15865.3795.1|Name=mRNA_H-elongata_contig15865.3795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
LEERFAKVGIFENCAVFGPKRFPIEENDLPEYGVDEIKMLGEHYGKKHSS
VPQCVDPDELAREWQYAK
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mRNA from alignment at H-elongata_contig15865:2186..2389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15865.3795.1 ID=mRNA_H-elongata_contig15865.3795.1|Name=mRNA_H-elongata_contig15865.3795.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig15865:2186..2389+ (Himanthalia elongata Himel1 dioecious)
CTCGAGGAGCGGTTTGCCAAGGTAGGCATCTTCGAGAACTGTGCAGTGTT
CGGCCCGAAGCGGTTTCCCATCGAGGAGAACGACCTCCCCGAGTACGGTG
TCGATGAGATCAAGATGTTGGGAGAGCACTACGGCAAGAAGCACAGTAGT
GTGCCACAGTGCGTTGACCCTGACGAGCTGGCTCGAGAGTGGCAGTACGC
CAAG
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Coding sequence (CDS) from alignment at H-elongata_contig15865:2186..2389+

>mRNA_H-elongata_contig15865.3795.1 ID=mRNA_H-elongata_contig15865.3795.1|Name=mRNA_H-elongata_contig15865.3795.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig15865:2186..2389+ (Himanthalia elongata Himel1 dioecious)
CTCGAGGAGCGGTTTGCCAAGGTAGGCATCTTCGAGAACTGTGCAGTGTT
CGGCCCGAAGCGGTTTCCCATCGAGGAGAACGACCTCCCCGAGTACGGTG
TCGATGAGATCAAGATGTTGGGAGAGCACTACGGCAAGAAGCACAGTAGT
GTGCCACAGTGCGTTGACCCTGACGAGCTGGCTCGAGAGTGGCAGTACGC
CAAGCTCGAGGAGCGGTTTGCCAAGGTAGGCATCTTCGAGAACTGTGCAG
TGTTCGGCCCGAAGCGGTTTCCCATCGAGGAGAACGACCTCCCCGAGTAC
GGTGTCGATGAGATCAAGATGTTGGGAGAGCACTACGGCAAGAAGCACAG
TAGTGTGCCACAGTGCGTTGACCCTGACGAGCTGGCTCGAGAGTGGCAGT
ACGCCAAG
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