mRNA_H-elongata_contig15862.3793.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15862.3793.1
Unique NamemRNA_H-elongata_contig15862.3793.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 3.340e-53
Identity = 79/88 (89.77%), Postives = 86/88 (97.73%), Query Frame = 1
Query:    1 MSSRPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFSTS 264
            MS+RPVIKTSTM PDMQEAAIQVAQDAIR+NNLEK+IANA+KAAFEGLYPSLWHCFVGRNFGC+VTHE TKF+YLYIGQIGVCLFST+
Sbjct:    1 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.020e-45
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 1
Query:    1 MSSRPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFSTS 264
            MS+RPVIKTSTM  DMQEAAIQVAQDAI++NNLEKEIA+AIK  FE +YPS+WHCFVGRNFG +VTHEQ+KFIY YIGQ+GVCLFST+
Sbjct:    1 MSARPVIKTSTMPADMQEAAIQVAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.080e-34
Identity = 57/88 (64.77%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 MSSRPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFSTS 264
            M++RPVIK S+MTPDMQE AIQ AQDAI   N E+EIA AI+   E ++P+ WH  VGRNFGC+VTHE +KFIY YIGQ+GVC+F+T+
Sbjct:   29 MAARPVIKHSSMTPDMQEMAIQCAQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.090e-33
Identity = 52/82 (63.41%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   16 VIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFST 261
            V+K S M  +MQ+AA+Q+AQDAIRE+  E+EIA+AIK  FE +Y + WHCFVGRNFGCYVTH++  F+Y YIGQ+G+CLF+T
Sbjct:   41 VVKASRMEQEMQDAAVQIAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.490e-28
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   16 VIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFST 261
            ++K + M   M E AI VA  AI+  N EKE A+AIKA  E L+P +WHCFVGR FGCYVTHE +KFIY Y+GQ+GVCLFS+
Sbjct:   95 IVKLNQMETVMAERAIDVALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: K3WKC4_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC4_GLOUD)

HSP 1 Score: 96.3 bits (238), Expect = 3.280e-24
Identity = 48/86 (55.81%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   10 RPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPS-LWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFSTS 264
            +PV+KTSTM PD+Q+  I VAQ A+     E++IA  +K  FE  Y   LWHC VGRN  CYVTHEQ+KF+Y YIGQ+ V LF+T+
Sbjct:    5 KPVVKTSTMDPDLQDEVILVAQHAMDTEIDEQQIAAKVKQHFEQKYHGMLWHCCVGRNVACYVTHEQSKFLYFYIGQMAVVLFATA 90          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A0R3WWJ5_HYDTA (Dynein light chain n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WWJ5_HYDTA)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-23
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    7 SRPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFST 261
            ++ V+K + M  DMQ+ A+  AQDA+ + N+EK+IA  IK  F+ LY   WHC VGRNFG YVTHE   FIY Y+GQ+ + LF +
Sbjct:   25 NKAVVKNADMAEDMQQRAVDCAQDAMNKYNVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A0R3WU97_HYDTA (Dynein light chain n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WU97_HYDTA)

HSP 1 Score: 94.7 bits (234), Expect = 1.450e-23
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    7 SRPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFST 261
            ++ VIK + M  +MQ+ A+  AQDA+ + N+EK+IA  IK  F+ LY   WHC VGRNFG YVTHE   FIY Y+GQ+ + LF +
Sbjct:    8 NKAVIKNADMVDEMQQRAVDCAQDAMEKFNIEKDIAAHIKKEFDKLYSPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKS 92          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A0R3WYJ9_HYDTA (Dynein light chain n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WYJ9_HYDTA)

HSP 1 Score: 94.7 bits (234), Expect = 1.450e-23
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 SSRPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFST 261
            S + VIK + M+ +MQ+ A+  AQDA+ + N+EK+IA  IK  F+ +Y   WHC VGRNFG YVTHE   FIY Y+GQ+ + LF +
Sbjct:    7 SQKAVIKNADMSEEMQQKAVDCAQDAMEKFNIEKDIAAHIKKEFDRMYNPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 92          
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Match: A0A564YX59_HYMDI (Dynein light chain n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564YX59_HYMDI)

HSP 1 Score: 93.6 bits (231), Expect = 2.660e-23
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   34 MTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYPSLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFST 261
            M  DMQ+ A+++AQ+AI  N++EK+IA  IK  F+G Y   WHC VGRNFG YVTHE   FIY Y+GQ+ V LF +
Sbjct:    1 MPEDMQQKAVEIAQEAIARNSVEKDIAAHIKKEFDGRYGQTWHCIVGRNFGSYVTHETKHFIYFYMGQVAVLLFKS 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15862.3793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM6_ECTSI3.340e-5389.77Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CI24_9STRA2.020e-4580.68Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2STQ1_9STRA1.080e-3464.77Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1UG18_9STRA1.090e-3363.41Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1C452_9STRA3.490e-2860.98Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
K3WKC4_GLOUD3.280e-2455.81Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
A0A0R3WWJ5_HYDTA1.160e-2350.59Dynein light chain n=2 Tax=Hydatigena taeniaeformi... [more]
A0A0R3WU97_HYDTA1.450e-2350.59Dynein light chain n=1 Tax=Hydatigena taeniaeformi... [more]
A0A0R3WYJ9_HYDTA1.450e-2350.00Dynein light chain n=1 Tax=Hydatigena taeniaeformi... [more]
A0A564YX59_HYMDI2.660e-2355.26Dynein light chain n=1 Tax=Hymenolepis diminuta Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15862contigH-elongata_contig15862:6201..6870 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5e-41
Seed eggNOG ortholog2880.D8LRM6
KEGG koko:K10418
KEGG Pathwayko04962,map04962
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-12_000380.1
Exons2
Model size267
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.2219343-CDS-H-elongata_contig15862:6200..63121622929934.2219343-CDS-H-elongata_contig15862:6200..6312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15862 6201..6312 -
1691679213.6717622-CDS-H-elongata_contig15862:6200..63121691679213.6717622-CDS-H-elongata_contig15862:6200..6312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15862 6201..6312 -
1622929934.235473-CDS-H-elongata_contig15862:6715..68701622929934.235473-CDS-H-elongata_contig15862:6715..6870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15862 6716..6870 -
1691679213.6912987-CDS-H-elongata_contig15862:6715..68701691679213.6912987-CDS-H-elongata_contig15862:6715..6870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15862 6716..6870 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15862.3793.1prot_H-elongata_contig15862.3793.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15862 6201..6870 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15862.3793.1

>prot_H-elongata_contig15862.3793.1 ID=prot_H-elongata_contig15862.3793.1|Name=mRNA_H-elongata_contig15862.3793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MSSRPVIKTSTMTPDMQEAAIQVAQDAIRENNLEKEIANAIKAAFEGLYP
SLWHCFVGRNFGCYVTHEQTKFIYLYIGQIGVCLFSTS*
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mRNA from alignment at H-elongata_contig15862:6201..6870-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15862.3793.1 ID=mRNA_H-elongata_contig15862.3793.1|Name=mRNA_H-elongata_contig15862.3793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig15862:6201..6870- (Himanthalia elongata Himel1 dioecious)
ATGTCATCCAGACCAGTTATTAAAACAAGCACCATGACTCCAGATATGCA GGAGGCTGCGATACAGGTCGCGCAAGATGCCATCCGGGAGAACAACTTGG AAAAGGAAATCGCGAATGCTATCAAGGCCGCGTTTGAAGGACTGTACCCT TCCTTGTAGGTCATCAGTAAGCCGCGCAGACGTGGAAAGTTACGTTATCG CTGAACTCCACTTCAAACAATAAACTTCGGAAATAGTTGTCACCGATTTG AGTGCCTTCGTTTAGTGCACTCGAACAAAATGAGAGCGTGTCTAATCTCA AACTTGAGATCTCGCTGAGAGCTTTTTATTATTTTGGGTGCTCCCCCCAG CGCGTTAGTGAACCGGGCCACGCTTCAGATTAAAAACATAAAGTTAAGCA TGTTCCGCATCTTCCTGCCACACCCTTTCGCTAAATATTTCCCAGTATCA ACTCGTTTGCACAACAACAACATGCACCATATATAGTATCAACACATGAC CGTCCTCAGTAGTAGTTGTTGACGATTCCTATCATCATGCCATTATATGT ACGAATAGGTGGCACTGTTTCGTGGGTCGGAACTTTGGATGCTACGTCAC GCACGAGCAAACTAAATTCATTTATCTTTACATCGGCCAGATCGGGGTTT GCCTTTTCTCAACGTCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig15862:6201..6870-

>mRNA_H-elongata_contig15862.3793.1 ID=mRNA_H-elongata_contig15862.3793.1|Name=mRNA_H-elongata_contig15862.3793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig15862:6201..6870- (Himanthalia elongata Himel1 dioecious)
ATGTCATCCAGACCAGTTATTAAAACAAGCACCATGACTCCAGATATGCA
GGAGGCTGCGATACAGGTCGCGCAAGATGCCATCCGGGAGAACAACTTGG
AAAAGGAAATCGCGAATGCTATCAAGGCCGCGTTTGAAGGACTGTACCCT
TCCTTATGTCATCCAGACCAGTTATTAAAACAAGCACCATGACTCCAGAT
ATGCAGGAGGCTGCGATACAGGTCGCGCAAGATGCCATCCGGGAGAACAA
CTTGGAAAAGGAAATCGCGAATGCTATCAAGGCCGCGTTTGAAGGACTGT
ACCCTTCCTTGTGGCACTGTTTCGTGGGTCGGAACTTTGGATGCTACGTC
ACGCACGAGCAAACTAAATTCATTTATCTTTACATCGGCCAGATCGGGGT
TTGCCTTTTCTCAACGTCATGAGTGGCACTGTTTCGTGGGTCGGAACTTT
GGATGCTACGTCACGCACGAGCAAACTAAATTCATTTATCTTTACATCGG
CCAGATCGGGGTTTGCCTTTTCTCAACGTCATGA
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