prot_H-elongata_contig158518.3792.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158518.3792.1
Unique Nameprot_H-elongata_contig158518.3792.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
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BLAST of mRNA_H-elongata_contig158518.3792.1 vs. uniprot
Match: A0A3S3P648_9ACAR (Endonuclease-reverse transcriptase-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P648_9ACAR)

HSP 1 Score: 49.7 bits (117), Expect = 5.500e-5
Identity = 23/75 (30.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:    9 ITRAGRPPEFISDRLLKVTLELRGRAKAVTFLVVYAPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANAR 83
            +TRA      ISDR+  +++ +R +   +T L +YAPT   +      F++SL+ A+++VP+ + ++++ D NA+
Sbjct:  131 VTRAIESYSTISDRI--ISIRIRAKPLFITILQIYAPTSDASEDEIERFYSSLEEALQQVPKKDIIYIMGDFNAK 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158518.3792.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3S3P648_9ACAR5.500e-530.67Endonuclease-reverse transcriptase-like protein n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10coord: 1..83
e-value: 2.0E-5
score: 26.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158518contigH-elongata_contig158518:4..252 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158518.3792.1mRNA_H-elongata_contig158518.3792.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158518 4..252 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158518.3792.1 ID=prot_H-elongata_contig158518.3792.1|Name=mRNA_H-elongata_contig158518.3792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VGLAIRTSITRAGRPPEFISDRLLKVTLELRGRAKAVTFLVVYAPTETQN
ASNKHAFWTSLDRAVEEVPRHEQLFVLMDANAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf