mRNA_H-elongata_contig158518.3792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158518.3792.1
Unique NamemRNA_H-elongata_contig158518.3792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158518.3792.1 vs. uniprot
Match: A0A3S3P648_9ACAR (Endonuclease-reverse transcriptase-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3P648_9ACAR)

HSP 1 Score: 49.7 bits (117), Expect = 5.500e-5
Identity = 23/75 (30.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   25 ITRAGRPPEFISDRLLKVTLELRGRAKAVTFLVVYAPTETQNASNKHAFWTSLDRAVEEVPRHEQLFVLMDANAR 249
            +TRA      ISDR+  +++ +R +   +T L +YAPT   +      F++SL+ A+++VP+ + ++++ D NA+
Sbjct:  131 VTRAIESYSTISDRI--ISIRIRAKPLFITILQIYAPTSDASEDEIERFYSSLEEALQQVPKKDIIYIMGDFNAK 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158518.3792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3S3P648_9ACAR5.500e-530.67Endonuclease-reverse transcriptase-like protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158518contigH-elongata_contig158518:4..252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.1699417-CDS-H-elongata_contig158518:3..2521622929934.1699417-CDS-H-elongata_contig158518:3..252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158518 4..252 -
1691679213.6591275-CDS-H-elongata_contig158518:3..2521691679213.6591275-CDS-H-elongata_contig158518:3..252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158518 4..252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158518.3792.1prot_H-elongata_contig158518.3792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158518 4..252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158518.3792.1

>prot_H-elongata_contig158518.3792.1 ID=prot_H-elongata_contig158518.3792.1|Name=mRNA_H-elongata_contig158518.3792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VGLAIRTSITRAGRPPEFISDRLLKVTLELRGRAKAVTFLVVYAPTETQN
ASNKHAFWTSLDRAVEEVPRHEQLFVLMDANAR
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mRNA from alignment at H-elongata_contig158518:4..252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158518.3792.1 ID=mRNA_H-elongata_contig158518.3792.1|Name=mRNA_H-elongata_contig158518.3792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig158518:4..252- (Himanthalia elongata Himel1 dioecious)
GTAGGGCTAGCTATTAGAACCTCCATCACACGTGCTGGACGCCCACCGGA
GTTTATCAGTGATCGATTGCTAAAGGTTACACTTGAATTACGGGGTCGAG
CCAAGGCCGTTACGTTTTTGGTGGTGTATGCCCCCACTGAAACACAGAAT
GCTAGTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGA
AGTACCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig158518:4..252-

>mRNA_H-elongata_contig158518.3792.1 ID=mRNA_H-elongata_contig158518.3792.1|Name=mRNA_H-elongata_contig158518.3792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig158518:4..252- (Himanthalia elongata Himel1 dioecious)
GTAGGGCTAGCTATTAGAACCTCCATCACACGTGCTGGACGCCCACCGGA
GTTTATCAGTGATCGATTGCTAAAGGTTACACTTGAATTACGGGGTCGAG
CCAAGGCCGTTACGTTTTTGGTGGTGTATGCCCCCACTGAAACACAGAAT
GCTAGTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGA
AGTACCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGCG
TAGGGCTAGCTATTAGAACCTCCATCACACGTGCTGGACGCCCACCGGAG
TTTATCAGTGATCGATTGCTAAAGGTTACACTTGAATTACGGGGTCGAGC
CAAGGCCGTTACGTTTTTGGTGGTGTATGCCCCCACTGAAACACAGAATG
CTAGTAATAAACATGCATTCTGGACGAGCTTGGATAGAGCTGTGGAGGAA
GTACCTAGACACGAACAGCTGTTCGTGTTGATGGATGCCAACGCCCGC
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