prot_H-elongata_contig158492.3791.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158492.3791.1
Unique Nameprot_H-elongata_contig158492.3791.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.090e-18
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
Query:   12 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 59
            P  L+   ++ RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV
Sbjct:   22 PISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 69          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A6S7FL12_PARCT (Small nuclear ribonucleoprotein E n=3 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FL12_PARCT)

HSP 1 Score: 80.5 bits (197), Expect = 9.710e-18
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0
Query:   12 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSVGLAAASD 97
            P  L+   ++ R+R+Q+WLYE T MRIEG I+GFDEYMNLVLDEAEEV L+R      T  T  R+LLK   ++++ SV   AA+ 
Sbjct:   15 PINLIFRYLQNRSRIQVWLYEQTNMRIEGHIIGFDEYMNLVLDEAEEVHLKRK-----TRKTLGRILLKGDNITLIMSVATEAATQ 95          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.360e-17
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 0
Query:   12 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSV 90
            P  L+   ++ RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEV L++ V  +V      R+LLK  T++++  V
Sbjct:   24 PISLIFRFLQNRTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVG-----RILLKGDTITLMQGV 97          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A024FYV6_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYV6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-15
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 0
Query:    1 LGLRPNLPARPPNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSV 90
            +  R   P   P  L+   ++ + RVQIWLYE T+MRIEG+I+GFDEYMN+VLDEAEEV +++     V      R+LLK  T++++ S+
Sbjct:    1 MSTRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQMRIEGRIMGFDEYMNIVLDEAEEVDVKK-----VKRAPLGRILLKGDTITLMMSI 85          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 2.150e-15
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 0
Query:   12 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLER 63
            P  L+   ++ +TRVQIWLYENT++RIEG+I+GFDEYMNLVLDEAEE+ +++
Sbjct:   12 PINLIFRFLQNKTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEELLMKK 63          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A7K7U820_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=14 Tax=Neognathae TaxID=8825 RepID=A0A7K7U820_9CHAR)

HSP 1 Score: 73.9 bits (180), Expect = 3.390e-15
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 0
Query:   12 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 59
            P++LL +I+ QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:   17 PDLLLSSIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 64          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A8H4AVF7_GIGMA (Small nuclear ribonucleoprotein E n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AVF7_GIGMA)

HSP 1 Score: 72.8 bits (177), Expect = 5.180e-15
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 0
Query:   20 MKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSVG 91
            M Q+TRVQIWLYE   +RIEGQI+GFDE+MNLVLD AEE+  ++      T  T  R+LLK   ++++ SVG
Sbjct:    1 MFQKTRVQIWLYEQVDLRIEGQIIGFDEFMNLVLDHAEEINTKKK-----TRKTLGRILLKGDNITLIQSVG 67          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A7K9ER96_BARMA (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9ER96_BARMA)

HSP 1 Score: 73.2 bits (178), Expect = 5.380e-15
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 0
Query:   11 PPNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 59
            PP +L  +I  QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:    7 PPGLLSFSITLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 55          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: F4P9I9_BATDJ (Small nuclear ribonucleoprotein E n=3 Tax=Batrachochytrium TaxID=100474 RepID=F4P9I9_BATDJ)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-14
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 0
Query:   12 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 59
            P  L+  +++Q++RVQIWLYE T++RIEGQILGFDE+MNLVLD+AEEV
Sbjct:   12 PINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEV 59          
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: U5EY89_9DIPT (Small nuclear ribonucleoprotein E n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5EY89_9DIPT)

HSP 1 Score: 71.6 bits (174), Expect = 2.540e-14
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0
Query:   12 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERL 64
            P  L+   ++ R+RVQ+WLYENT +RIEG I+GFDEYMNLVLD+AEE  +++L
Sbjct:   15 PINLIFRYLQNRSRVQVWLYENTNLRIEGHIVGFDEYMNLVLDDAEEYNVKKL 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI5.090e-1881.25Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A6S7FL12_PARCT9.710e-1851.16Small nuclear ribonucleoprotein E n=3 Tax=Alcyonac... [more]
A0A835YX06_9STRA4.360e-1756.96Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A024FYV6_9STRA1.160e-1545.56Small nuclear ribonucleoprotein E n=1 Tax=Albugo c... [more]
R1EMN3_EMIHU2.150e-1563.46Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
A0A7K7U820_9CHAR3.390e-1566.67Small nuclear ribonucleoprotein E (Fragment) n=14 ... [more]
A0A8H4AVF7_GIGMA5.180e-1554.17Small nuclear ribonucleoprotein E n=1 Tax=Gigaspor... [more]
A0A7K9ER96_BARMA5.380e-1565.31Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
F4P9I9_BATDJ1.330e-1468.75Small nuclear ribonucleoprotein E n=3 Tax=Batracho... [more]
U5EY89_9DIPT2.540e-1460.38Small nuclear ribonucleoprotein E n=1 Tax=Corethre... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 18..89
e-value: 4.7E-5
score: 32.8
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 20..60
e-value: 5.9E-9
score: 35.5
NoneNo IPR availableGENE3D2.30.30.100coord: 8..89
e-value: 8.1E-21
score: 75.7
NoneNo IPR availablePANTHERPTHR11193:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 12..89
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 12..89
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 15..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158492contigH-elongata_contig158492:590..889 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158492.3791.1mRNA_H-elongata_contig158492.3791.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158492 590..889 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158492.3791.1 ID=prot_H-elongata_contig158492.3791.1|Name=mRNA_H-elongata_contig158492.3791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
LGLRPNLPARPPNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMN
LVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSVGLAAASDCH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027078snRNP-E
IPR010920LSM_dom_sf