mRNA_H-elongata_contig158492.3791.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158492.3791.1
Unique NamemRNA_H-elongata_contig158492.3791.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: D8LD43_ECTSI (Small nuclear ribonucleoprotein E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD43_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.090e-18
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   34 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 177
            P  L+   ++ RTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV
Sbjct:   22 PISLIFRFLQNRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 69
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BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A6S7FL12_PARCT (Small nuclear ribonucleoprotein E n=3 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FL12_PARCT)

HSP 1 Score: 80.5 bits (197), Expect = 9.710e-18
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   34 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSVGLAAASD 291
            P  L+   ++ R+R+Q+WLYE T MRIEG I+GFDEYMNLVLDEAEEV L+R      T  T  R+LLK   ++++ SV   AA+ 
Sbjct:   15 PINLIFRYLQNRSRIQVWLYEQTNMRIEGHIIGFDEYMNLVLDEAEEVHLKRK-----TRKTLGRILLKGDNITLIMSVATEAATQ 95
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BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A835YX06_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX06_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.360e-17
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   34 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSV 270
            P  L+   ++ RTRVQIWLYENT MRIEG+I GFDEYMNLVLDEAEEV L++ V  +V      R+LLK  T++++  V
Sbjct:   24 PISLIFRFLQNRTRVQIWLYENTTMRIEGRISGFDEYMNLVLDEAEEVDLKKNVRTQVG-----RILLKGDTITLMQGV 97
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BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A024FYV6_9STRA (Small nuclear ribonucleoprotein E n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYV6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-15
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 LGLRPNLPARPPNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSV 270
            +  R   P   P  L+   ++ + RVQIWLYE T+MRIEG+I+GFDEYMN+VLDEAEEV +++     V      R+LLK  T++++ S+
Sbjct:    1 MSTRVQKPMTQPINLMFRFLQNKARVQIWLYEQTQMRIEGRIMGFDEYMNIVLDEAEEVDVKK-----VKRAPLGRILLKGDTITLMMSI 85
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BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: R1EMN3_EMIHU (Small nuclear ribonucleoprotein E n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EMN3_EMIHU)

HSP 1 Score: 74.3 bits (181), Expect = 2.150e-15
Identity = 33/52 (63.46%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   34 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLER 189
            P  L+   ++ +TRVQIWLYENT++RIEG+I+GFDEYMNLVLDEAEE+ +++
Sbjct:   12 PINLIFRFLQNKTRVQIWLYENTELRIEGKIIGFDEYMNLVLDEAEELLMKK 63
[Close]
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A7K7U820_9CHAR (Small nuclear ribonucleoprotein E (Fragment) n=14 Tax=Neognathae TaxID=8825 RepID=A0A7K7U820_9CHAR)

HSP 1 Score: 73.9 bits (180), Expect = 3.390e-15
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   34 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 177
            P++LL +I+ QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:   17 PDLLLSSIILQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 64
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BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A8H4AVF7_GIGMA (Small nuclear ribonucleoprotein E n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AVF7_GIGMA)

HSP 1 Score: 72.8 bits (177), Expect = 5.180e-15
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   58 MKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSVG 273
            M Q+TRVQIWLYE   +RIEGQI+GFDE+MNLVLD AEE+  ++      T  T  R+LLK   ++++ SVG
Sbjct:    1 MFQKTRVQIWLYEQVDLRIEGQIIGFDEFMNLVLDHAEEINTKKK-----TRKTLGRILLKGDNITLIQSVG 67
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BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: A0A7K9ER96_BARMA (Small nuclear ribonucleoprotein E (Fragment) n=1 Tax=Baryphthengus martii TaxID=176943 RepID=A0A7K9ER96_BARMA)

HSP 1 Score: 73.2 bits (178), Expect = 5.380e-15
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   31 PPNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 177
            PP +L  +I  QR+R+Q+WLYE   MRIEG I+GFDEYMNLVLD+AEE+
Sbjct:    7 PPGLLSFSITLQRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI 55
[Close]
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: F4P9I9_BATDJ (Small nuclear ribonucleoprotein E n=3 Tax=Batrachochytrium TaxID=100474 RepID=F4P9I9_BATDJ)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-14
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   34 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEV 177
            P  L+  +++Q++RVQIWLYE T++RIEGQILGFDE+MNLVLD+AEEV
Sbjct:   12 PINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEV 59
[Close]
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Match: U5EY89_9DIPT (Small nuclear ribonucleoprotein E n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5EY89_9DIPT)

HSP 1 Score: 71.6 bits (174), Expect = 2.540e-14
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   34 PNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMNLVLDEAEEVRLERL 192
            P  L+   ++ R+RVQ+WLYENT +RIEG I+GFDEYMNLVLD+AEE  +++L
Sbjct:   15 PINLIFRYLQNRSRVQVWLYENTNLRIEGHIVGFDEYMNLVLDDAEEYNVKKL 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158492.3791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD43_ECTSI5.090e-1881.25Small nuclear ribonucleoprotein E n=2 Tax=Ectocarp... [more]
A0A6S7FL12_PARCT9.710e-1851.16Small nuclear ribonucleoprotein E n=3 Tax=Alcyonac... [more]
A0A835YX06_9STRA4.360e-1756.96Small nuclear ribonucleoprotein E n=1 Tax=Tribonem... [more]
A0A024FYV6_9STRA1.160e-1545.56Small nuclear ribonucleoprotein E n=1 Tax=Albugo c... [more]
R1EMN3_EMIHU2.150e-1563.46Small nuclear ribonucleoprotein E n=1 Tax=Emiliani... [more]
A0A7K7U820_9CHAR3.390e-1566.67Small nuclear ribonucleoprotein E (Fragment) n=14 ... [more]
A0A8H4AVF7_GIGMA5.180e-1554.17Small nuclear ribonucleoprotein E n=1 Tax=Gigaspor... [more]
A0A7K9ER96_BARMA5.380e-1565.31Small nuclear ribonucleoprotein E (Fragment) n=1 T... [more]
F4P9I9_BATDJ1.330e-1468.75Small nuclear ribonucleoprotein E n=3 Tax=Batracho... [more]
U5EY89_9DIPT2.540e-1460.38Small nuclear ribonucleoprotein E n=1 Tax=Corethre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158492contigH-elongata_contig158492:590..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D8LD43
Preferred nameSNRPE
KEGG koko:K11097,ko:K12272,ko:K18754
KEGG TC3.A.5.8
KEGG Pathwayko03040,ko03060,map03040,map03060
KEGG ModuleM00351,M00352,M00354,M00355,M00398
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034715,GO:0034719,GO:0035770,GO:0036464,GO:0042303,GO:0042633,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
EggNOG free text desc.spliceosomal snRNP assembly
EggNOG OGsCOG1958@1,KOG1774@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03019,ko03032,ko03041,ko04031
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein E
Ec32 orthologEc-11_000380.1
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929934.1311219-CDS-H-elongata_contig158492:589..8891622929934.1311219-CDS-H-elongata_contig158492:589..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158492 590..889 -
1691679213.6464956-CDS-H-elongata_contig158492:589..8891691679213.6464956-CDS-H-elongata_contig158492:589..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158492 590..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158492.3791.1prot_H-elongata_contig158492.3791.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158492 590..889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158492.3791.1

>prot_H-elongata_contig158492.3791.1 ID=prot_H-elongata_contig158492.3791.1|Name=mRNA_H-elongata_contig158492.3791.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
LGLRPNLPARPPNILLHAIMKQRTRVQIWLYENTKMRIEGQILGFDEYMN
LVLDEAEEVRLERLVANEVTEVTATRVLLKLLTVSIVYSVGLAAASDCH*
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mRNA from alignment at H-elongata_contig158492:590..889-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158492.3791.1 ID=mRNA_H-elongata_contig158492.3791.1|Name=mRNA_H-elongata_contig158492.3791.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig158492:590..889- (Himanthalia elongata Himel1 dioecious)
CTTGGATTGAGACCCAACCTACCCGCCCGCCCGCCCAATATACTACTACA
TGCGATCATGAAACAGCGAACGAGGGTCCAGATTTGGTTGTACGAGAACA
CCAAGATGCGGATTGAGGGACAGATCCTGGGTTTCGACGAGTACATGAAT
CTGGTGCTCGACGAGGCGGAAGAGGTACGGTTGGAGAGGCTCGTGGCTAA
TGAGGTTACCGAGGTTACCGCGACGCGAGTCTTGTTGAAATTATTAACAG
TAAGTATAGTGTACAGTGTGGGTCTGGCGGCGGCAAGCGACTGTCATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig158492:590..889-

>mRNA_H-elongata_contig158492.3791.1 ID=mRNA_H-elongata_contig158492.3791.1|Name=mRNA_H-elongata_contig158492.3791.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig158492:590..889- (Himanthalia elongata Himel1 dioecious)
CTTGGATTGAGACCCAACCTACCCGCCCGCCCGCCCAATATACTACTACA
TGCGATCATGAAACAGCGAACGAGGGTCCAGATTTGGTTGTACGAGAACA
CCAAGATGCGGATTGAGGGACAGATCCTGGGTTTCGACGAGTACATGAAT
CTGGTGCTCGACGAGGCGGAAGAGGTACGGTTGGAGAGGCTCGTGGCTAA
TGAGGTTACCGAGGTTACCGCGACGCGAGTCTTGTTGAAATTATTAACAG
TAAGTATAGTGTACAGTGTGGGTCTGGCGGCGGCAAGCGACTGTCATTAA
CTTGGATTGAGACCCAACCTACCCGCCCGCCCGCCCAATATACTACTACA
TGCGATCATGAAACAGCGAACGAGGGTCCAGATTTGGTTGTACGAGAACA
CCAAGATGCGGATTGAGGGACAGATCCTGGGTTTCGACGAGTACATGAAT
CTGGTGCTCGACGAGGCGGAAGAGGTACGGTTGGAGAGGCTCGTGGCTAA
TGAGGTTACCGAGGTTACCGCGACGCGAGTCTTGTTGAAATTATTAACAG
TAAGTATAGTGTACAGTGTGGGTCTGGCGGCGGCAAGCGACTGTCATTAA
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