mRNA_H-elongata_contig15848.3790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15848.3790.1
Unique NamemRNA_H-elongata_contig15848.3790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15848.3790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15848contigH-elongata_contig15848:7348..7659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size300
Cds size171
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15848.3790.1prot_H-elongata_contig15848.3790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15848 7420..7602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.8813188-UTR-H-elongata_contig15848:7347..74191622929933.8813188-UTR-H-elongata_contig15848:7347..7419Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 7348..7419 -
1691679213.5160968-UTR-H-elongata_contig15848:7347..74191691679213.5160968-UTR-H-elongata_contig15848:7347..7419Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 7348..7419 -
1622929933.9315395-UTR-H-elongata_contig15848:7602..76591622929933.9315395-UTR-H-elongata_contig15848:7602..7659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 7603..7659 -
1691679213.5433004-UTR-H-elongata_contig15848:7602..76591691679213.5433004-UTR-H-elongata_contig15848:7602..7659Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15848 7603..7659 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.9020917-CDS-H-elongata_contig15848:7419..75231622929933.9020917-CDS-H-elongata_contig15848:7419..7523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 7420..7523 -
1691679213.5243833-CDS-H-elongata_contig15848:7419..75231691679213.5243833-CDS-H-elongata_contig15848:7419..7523Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 7420..7523 -
1622929933.9164424-CDS-H-elongata_contig15848:7535..76021622929933.9164424-CDS-H-elongata_contig15848:7535..7602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 7536..7602 -
1691679213.5340984-CDS-H-elongata_contig15848:7535..76021691679213.5340984-CDS-H-elongata_contig15848:7535..7602Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15848 7536..7602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15848.3790.1

>prot_H-elongata_contig15848.3790.1 ID=prot_H-elongata_contig15848.3790.1|Name=mRNA_H-elongata_contig15848.3790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MVLVGRVHQPHTSWGWITVCDHPQDTTLRTTCQNSFRVQHYVSLTPWISD
DSMMNS*
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mRNA from alignment at H-elongata_contig15848:7348..7659-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15848.3790.1 ID=mRNA_H-elongata_contig15848.3790.1|Name=mRNA_H-elongata_contig15848.3790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig15848:7348..7659- (Himanthalia elongata Himel1 dioecious)
AGTTTCATAGCAACGTGACCTTCCGCCAGATCTCTTTTTGAATGGATTCT
ATTGAGAATGGTTCTTGTTGGTAGGGTACATCAGCCTCACACGAGCTGGG
GTTGGATCACCGTTTGTGATCACCGTTTATGCCAAGCACAAGATACAACG
CTCCGGACGACCTGCCAGAATAGTTTTCGAGTGCAGCACTACGTGAGCCT
TACTCCTTGGATATCTGATGATTCGATGATGAATTCGTGACGGTTTGTGC
TTTCCACGGCCTGCCGCAATACGAAGTGCGGCGAAGTCGCCTCGTCCGCC
CTTTTAGAGCAC
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Coding sequence (CDS) from alignment at H-elongata_contig15848:7348..7659-

>mRNA_H-elongata_contig15848.3790.1 ID=mRNA_H-elongata_contig15848.3790.1|Name=mRNA_H-elongata_contig15848.3790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig15848:7348..7659- (Himanthalia elongata Himel1 dioecious)
ATGGTTCTTGTTGGTAGGGTACATCAGCCTCACACGAGCTGGGGTTGGAT
CACCGTTTGTGATCACCATGGTTCTTGTTGGTAGGGTACATCAGCCTCAC
ACGAGCTGGGGTTGGATCACCGTTTGTGATCACCCACAAGATACAACGCT
CCGGACGACCTGCCAGAATAGTTTTCGAGTGCAGCACTACGTGAGCCTTA
CTCCTTGGATATCTGATGATTCGATGATGAATTCGTGACACAAGATACAA
CGCTCCGGACGACCTGCCAGAATAGTTTTCGAGTGCAGCACTACGTGAGC
CTTACTCCTTGGATATCTGATGATTCGATGATGAATTCGTGA
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