mRNA_H-elongata_contig15839.3786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15839.3786.1
Unique NamemRNA_H-elongata_contig15839.3786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A6H5JFY8_9PHAE (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFY8_9PHAE)

HSP 1 Score: 354 bits (909), Expect = 2.530e-116
Identity = 176/236 (74.58%), Postives = 200/236 (84.75%), Query Frame = 1
Query:    1 SGKDPYLTLRTQTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQ 708
            SGKDPY  +R QTAEATQ AI+AGI LIELEFPPVRGKLDISLGETLDANR FARELAR+FSARMG+ LWL       A LA+ TYGGTTFRVV I SAI+DLKD+ CQ+QIVVNPGF+V EWIVLD L RP VPMVMLNG LD+LRGGYYPRIF+PGLY+A +RFLK FETVYYLKALPGGWIFR+APEDWQ++S +Q   K+G++A ES+VL ST DRPDYN A+K VQAA ++
Sbjct:  143 SGKDPYAAVRKQTAEATQDAINAGINLIELEFPPVRGKLDISLGETLDANRSFARELARSFSARMGKALWL-------AELAQNTYGGTTFRVVGINSAIKDLKDEECQMQIVVNPGFDVNEWIVLDSLVRPDVPMVMLNGNLDKLRGGYYPRIFFPGLYNAKERFLKKFETVYYLKALPGGWIFRRAPEDWQVVSAAQ-SEKRGQRAAESKVLSSTPDRPDYNTAVKTVQAAGRE 370          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: W7TLD5_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLD5_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.990e-69
Identity = 120/260 (46.15%), Postives = 173/260 (66.54%), Query Frame = 1
Query:    4 GKDPYLTLRTQTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQ-IISMSQL--------GNKQGRQAVESRVLESTADRPDYN--------RALKVVQAAAQQQRAQSKES 732
            G   Y  +R Q  EA QA + AG   +E+EFP   G++D+SLGE LD +R + RE  R F+ + G +LW++FPD  EATLA + +GG  FR++ I +A++  KD+ C+LQI V PGFNV+E+I L+K+ RP VPM+++NG LDR+RGGYYPRIFYPGLY+  +R L+ FE VYYLK   GG+IFRK PE+WQ +++   L        G+K GR+ V ++V+ ++ +RP YN         +L + +AA + Q A  +E+
Sbjct:   64 GSSFYAEVRKQATEAVQAGLKAGFEQMEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEPCELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYNVKERMLQYFEPVYYLKPAQGGFIFRKFPEEWQQVLAYYDLQPGTGRGRGDK-GRKEVLTKVVATSEERPAYNDVVNALKKESLSMARAAQEAQEAAEREA 321          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A836CP02_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP02_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.750e-63
Identity = 114/223 (51.12%), Postives = 150/223 (67.26%), Query Frame = 1
Query:  103 VRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETY-----GGTTFRVVSIQSAI--RDLKDDNCQLQIVVNPGFNVEEWIVLDKL------------ARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQR 714
            ++GKLDISLGETLDANR FAREL R FSA+MG+ LW VF D  EA LA + +     G   FRV SI+ A+  R   D  C LQ+VV PGFN++EWI LD L            A     MV+LNG LD++RGGYYP++ YPGL+ A  RF+KNFE VYYLKALP GW+FR+ PEDWQ+I  ++ G+       +  VL++++ RP+YN A K+++AAA +++
Sbjct:    1 MQGKLDISLGETLDANRGFARELMRAFSAKMGKALWAVFADPGEAKLAAKAFTGGASGSLPFRVTSIKEALGKRAAADGGCDLQLVVQPGFNIDEWIQLDTLYAAGAKARQAAGAAGQPSMVVLNGSLDKVRGGYYPKLVYPGLHAAKDRFIKNFEPVYYLKALPEGWLFRRYPEDWQVI-YAERGS-------DPVVLQTSSTRPEYNNAAKLIKAAALERQ 215          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A4D9D5M4_9STRA (DUF1995 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5M4_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.560e-63
Identity = 109/234 (46.58%), Postives = 159/234 (67.95%), Query Frame = 1
Query:   82 IELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQ-IISMSQL--------GNKQGRQAVESRVLESTADRPDYN--------RALKVVQAAAQQQRAQSKES 732
            +E+EFP   G++D+SLGE LD +R + RE  R F+ + G +LW++FPD  EATLA + +GG  FR++ I +A++  KD+ C+LQI V PGFNV+E+I L+K+ RP VPM+++NG LDR+RGGYYPRIFYPGLY   +R L+ FE VYYLK   GG++FRK PE+WQ +++   L        G+K GR+ V ++V+ +  +RP YN         +L + +AA + Q A  +E+
Sbjct:    1 MEIEFPISPGRIDVSLGEFLDDSREWTREFVRPFTPK-GAKLWVIFPDGKEATLAGKRWGGVNFRIMGIDTAMKASKDEACELQIAVTPGFNVQEYINLEKVRRPGVPMIVVNGNLDRIRGGYYPRIFYPGLYKVKERMLQYFEPVYYLKPAQGGFLFRKFPEEWQQVLAYYDLQPGAGRGRGDK-GRKQVLTKVVATCEERPAYNDVVNALKKESLSMARAAQEAQEAAEREA 232          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: M2Y6Q8_GALSU (DUF1995 domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6Q8_GALSU)

HSP 1 Score: 149 bits (375), Expect = 4.510e-38
Identity = 72/182 (39.56%), Postives = 109/182 (59.89%), Query Frame = 1
Query:   43 EATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQ-ELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQII 585
            E+ ++AI  G+ L+E++FPP++     +L + +DANR FA+ + + F    G    ++VFPDDAE+ LARE     T   V I S  RD+   +  L +++NPGF V+EW  +++     VP+++ N  LD+LRGGYYPR  YP LY    + L  FE VYY++    G + R+ P  WQI+
Sbjct:   61 ESCKSAICDGLKLLEVQFPPLKNIGSAALNQVMDANRTFAKSVVQRFPHVSGNGTTFVVFPDDAESKLAREDRDFRTLDSVFITSLQRDIDLQDASLVVILNPGFQVQEWFEVERFCNYQVPVILFNADLDKLRGGYYPRFLYPKLYATKDKCLTKFEPVYYVRFFVNGALIRRYPNPWQIV 242          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A5J4Z109_PORPP (Protein LOW PSII ACCUMULATION 3, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z109_PORPP)

HSP 1 Score: 147 bits (370), Expect = 5.300e-37
Identity = 98/250 (39.20%), Postives = 139/250 (55.60%), Query Frame = 1
Query:   16 YLTLRTQTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSA-RMGQELWLVFPDDAEATLARETYGGTT---FRVVSIQSAI-----RDLKDDNCQ-LQIVVNPGFNVEEWIVLDKL--ARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGW--IFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQRAQS 723
            Y  L  Q+ EA +AA+   +  +ELEFP +R     +L +  DANR  AR LA   +A +    + LVFPD  EA LA + +G +T   F V S+ +A      R+    + + L +VVNPGFN+EEW+ L+ L    PS P++++NGG+DR+R GYYPR+FYP L+    RFL  FE V++ K    G   ++RK P DWQ +   + G          R+L   A RP+Y    KVV+   Q  RA+S
Sbjct:   62 YPQLYVQSLEAIRAALKEKVQFLELEFPALRNMATSALNQIADANREHARALATALAADKDAGTVCLVFPDAKEAALATKVFGESTVLPFEVGSLAAAATMQAEREQPAGSTRTLFVVVNPGFNIEEWLQLESLHLGHPSDPILVINGGMDRVRSGYYPRLFYPKLHQTKDRFLCKFEPVFFYKPFGSGLGTLYRKFPADWQTLFHVKDGGGY-------RLLSQDAQRPEY----KVVE---QNFRAES 297          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A7S0G1A8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G1A8_9RHOD)

HSP 1 Score: 143 bits (361), Expect = 1.020e-36
Identity = 82/224 (36.61%), Postives = 126/224 (56.25%), Query Frame = 1
Query:   79 LIELEFPPVR-GKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETY----GGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPG-GWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQRAQSKES 732
            L+E++FPP        +L ET+DANR  AREL R F+      L + FPD  EA LA+ ++    G   F + +I++A RD    N +L  V+NPGFN++E+I L+        +V++NG LDR+RGGYYPRIFYP L+   +R L+ F ++Y+ K+ P  G + R  P  W++   S  G        E + L  + +RP Y    ++++ AA  +R  S ++
Sbjct:    2 LLEVQFPPTTTAAASAALNETMDANRRHARELIRGFTMEYSGRLSVAFPDKGEAVLAQRSWKVDEGEERFYISTIEAAPRD---PNAELFFVLNPGFNIDEYINLENFDDEKRTIVVINGELDRIRGGYYPRIFYPKLHKVAERSLRKFVSIYFFKSYPNRGTLLRAYPGPWRLFYTSAQG--------EIKCLIESEERPSYQEMERILRKAADDERLSSYDA 214          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A2V3IVF9_9FLOR (DUF1995 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVF9_9FLOR)

HSP 1 Score: 142 bits (359), Expect = 2.170e-36
Identity = 74/186 (39.78%), Postives = 109/186 (58.60%), Query Frame = 1
Query:   58 AISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARM-GQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPS--VPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALP-GGWIFRKAPEDWQIISMSQLG 603
            A+S+G  LIEL+FPP+      +L E LDANR F R+L R+   +   ++L ++FPD  EA LAR+ YG   F +  I     +       + ++VNPGFN+ EWI +  L        +V +N   D++RGGYYPR+FYPGL+ A  + LK FE +YY+K+   GG + R+ PE W++    + G
Sbjct:    4 ALSSGKPLIELQFPPISNMATAALNELLDANRAFTRDLMRSLVPKYDAKDLRVLFPDVGEARLARDVYGDVPFGIGVIPKQQPEFVQ-RAGVAVIVNPGFNISEWINIQNLVSEDSKCTLVTVNADFDKVRGGYYPRLFYPGLHKARDKVLKRFEEIYYIKSFSNGGTLLRRFPEGWKLFYADKDG 188          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: M1VKG6_CYAM1 (DUF1995 domain-containing protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VKG6_CYAM1)

HSP 1 Score: 135 bits (341), Expect = 1.820e-33
Identity = 82/219 (37.44%), Postives = 119/219 (54.34%), Query Frame = 1
Query:   79 LIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGT--TFRVVSIQSAIRDLKDDNCQ---LQIVVNPGFNVEEWIVLDK--LARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGWIFRKAPEDWQIISMSQLGNKQGRQAVESRVLESTADRPDYNRALKVVQAAAQQQR 714
            L E+ FP VR     +L   LDAN   ARE+ + F+A   + L LVFPD AEA +A + YG +  TF + ++    R       +   L  VV PGFN++EW+ L++  L  P   +V+LNG +DRLR  YYP +FYP L    KR+L+ FE +YYLK LP G +FR  PE WQ    +  G        E+  +    +RP + +  + +   +++QR
Sbjct:   38 LYEVSFPAVRDTT-AALSRILDANTSHAREIIKPFAASFRKRLHLVFPDVAEAKIAEKVYGSSEHTFTLSALPLYERPAFLQQVEAPALVFVVQPGFNIDEWLQLERPALLYPDASIVVLNGNMDRLRSNYYPPLFYPRLTALRKRYLEQFEPIYYLKPLPNGLLFRVFPEPWQTFFCASPG--------EATRIAVDDERPTFPQTTQRLMELSREQR 247          
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Match: A0A7S0ZAT4_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAT4_9RHOD)

HSP 1 Score: 133 bits (334), Expect = 9.460e-32
Identity = 76/193 (39.38%), Postives = 109/193 (56.48%), Query Frame = 1
Query:   34 QTAEATQAAISAGITLIELEFPPVRGKLDISLGETLDANRVFARELARTFSARMGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVVNPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATKRFLKNFETVYYLKALPGGW--IFRKAPEDWQIISMSQLGN 606
            Q   A   A+ AG+ L E++FP V      +L + LDANR  A  L++    R    + + FPD  E  LA+  +   +  +  I S    L  D+ +  +VV PGFNV+EW+ ++KL R   P+++LNG +DR+RGGYYPRIFYPGL+    RFL  FE +++LK    G   +FRK PE WQ +     G+
Sbjct:   95 QVNAAISEALDAGMELAEVQFPAVPNIATAALNQLLDANRNHALVLSKALEKR--GSVRVAFPDAGETKLAKNAWKNESDNI-KISSIKAGLDSDSGKSILVVMPGFNVDEWLDMEKL-RIGPPIIVLNGEMDRVRGGYYPRIFYPGLHRVKDRFLNKFEPIFFLKQFGSGLGVLFRKYPEPWQTLFRDSDGS 283          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15839.3786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFY8_9PHAE2.530e-11674.58DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
W7TLD5_9STRA1.990e-6946.15DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
A0A836CP02_9STRA1.750e-6351.12DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
A0A4D9D5M4_9STRA2.560e-6346.58DUF1995 domain-containing protein n=1 Tax=Nannochl... [more]
M2Y6Q8_GALSU4.510e-3839.56DUF1995 domain-containing protein n=1 Tax=Galdieri... [more]
A0A5J4Z109_PORPP5.300e-3739.20Protein LOW PSII ACCUMULATION 3, chloroplastic n=1... [more]
A0A7S0G1A8_9RHOD1.020e-3636.61Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2V3IVF9_9FLOR2.170e-3639.78DUF1995 domain-containing protein n=1 Tax=Gracilar... [more]
M1VKG6_CYAM11.820e-3337.44DUF1995 domain-containing protein n=1 Tax=Cyanidio... [more]
A0A7S0ZAT4_9RHOD9.460e-3239.38Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15839contigH-elongata_contig15839:970..4615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.7
Seed ortholog evalue1.2e-70
Seed eggNOG ortholog2880.D7G8C6
EggNOG free text desc.Domain of unknown function (DUF1995)
EggNOG OGs2CQRD@1,2R5HU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF1995
Ec32 orthologEc-19_003980.1
Exons6
Model size1352
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15839.3786.1prot_H-elongata_contig15839.3786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15839 1878..3998 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.5964656-UTR-H-elongata_contig15839:969..10501622929933.5964656-UTR-H-elongata_contig15839:969..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 970..1050 +
1691679213.4183893-UTR-H-elongata_contig15839:969..10501691679213.4183893-UTR-H-elongata_contig15839:969..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 970..1050 +
1622929933.613011-UTR-H-elongata_contig15839:1326..13801622929933.613011-UTR-H-elongata_contig15839:1326..1380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 1327..1380 +
1691679213.4297445-UTR-H-elongata_contig15839:1326..13801691679213.4297445-UTR-H-elongata_contig15839:1326..1380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 1327..1380 +
1622929933.6271567-UTR-H-elongata_contig15839:1820..18771622929933.6271567-UTR-H-elongata_contig15839:1820..1877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 1821..1877 +
1691679213.4400024-UTR-H-elongata_contig15839:1820..18771691679213.4400024-UTR-H-elongata_contig15839:1820..1877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 1821..1877 +
1622929933.7254758-UTR-H-elongata_contig15839:3998..46151622929933.7254758-UTR-H-elongata_contig15839:3998..4615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 3999..4615 +
1691679213.4863868-UTR-H-elongata_contig15839:3998..46151691679213.4863868-UTR-H-elongata_contig15839:3998..4615Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15839 3999..4615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929933.6410766-CDS-H-elongata_contig15839:1877..19191622929933.6410766-CDS-H-elongata_contig15839:1877..1919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 1878..1919 +
1691679213.450171-CDS-H-elongata_contig15839:1877..19191691679213.450171-CDS-H-elongata_contig15839:1877..1919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 1878..1919 +
1622929933.6567543-CDS-H-elongata_contig15839:2151..23521622929933.6567543-CDS-H-elongata_contig15839:2151..2352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 2152..2352 +
1691679213.4601784-CDS-H-elongata_contig15839:2151..23521691679213.4601784-CDS-H-elongata_contig15839:2151..2352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 2152..2352 +
1622929933.6759682-CDS-H-elongata_contig15839:3115..32591622929933.6759682-CDS-H-elongata_contig15839:3115..3259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 3116..3259 +
1691679213.4694226-CDS-H-elongata_contig15839:3115..32591691679213.4694226-CDS-H-elongata_contig15839:3115..3259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 3116..3259 +
1622929933.7045095-CDS-H-elongata_contig15839:3842..39981622929933.7045095-CDS-H-elongata_contig15839:3842..3998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 3843..3998 +
1691679213.4779663-CDS-H-elongata_contig15839:3842..39981691679213.4779663-CDS-H-elongata_contig15839:3842..3998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15839 3843..3998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15839.3786.1

>prot_H-elongata_contig15839.3786.1 ID=prot_H-elongata_contig15839.3786.1|Name=mRNA_H-elongata_contig15839.3786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=181bp
MGQELWLVFPDDAEATLARETYGGTTFRVVSIQSAIRDLKDDNCQLQIVV
NPGFNVEEWIVLDKLARPSVPMVMLNGGLDRLRGGYYPRIFYPGLYDATK
RFLKNFETVYYLKALPGGWIFRKAPEDWQIISMSQLGNKQGRQAVESRVL
ESTADRPDYNRALKVVQAAAQQQRAQSKES*
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mRNA from alignment at H-elongata_contig15839:970..4615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15839.3786.1 ID=mRNA_H-elongata_contig15839.3786.1|Name=mRNA_H-elongata_contig15839.3786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3646bp|location=Sequence derived from alignment at H-elongata_contig15839:970..4615+ (Himanthalia elongata Himel1 dioecious)
AGCGGCAAGGACCCGTATTTGACTCTCAGAACGCAGACGGCTGAGGCGAC CCAGGCGGCCATCAGCGCGGGAATCACGCTCGTGAGTTAGGAAAACAGGA GGCGAACGCGAGCCACTTCAGCTACCGTCCCGATCCGTCCCGAGCATAGA TATCAAGCTACCTAGCGGGTGATGCTTAAATCCTTGTTCAGCATCACTGC GCCAAACTTTAGTATCGAGTGTGTACAAGTACGAGTGCAAGGAAGTACCC TACATGTCGAATAGGGTGCGTCGCGGTTGGCCTACCCCGACGACCCCTCC GTCCCGCTCCCGGGGGCATTCGCCGCGCCCGTCCGCAACACTTCATCGCA CACGCAGATCGAGCTGGAGTTCCCACCCGTGCGAGGGAAGCTAGACATCT CCCTGGGTGAAGTGAGTGAATTTGGGGGGGTTGGTCCGAAAGGAAGCCAC AGCAACTCGCAGCCGCTTGCTGATGTATCATATAATTCTCTTAATATTTT CTAGCTTGAACTCGCACGTACGTAACAAAAGAAGTAGCCGCAACATTTTA CAAAATTGAATTCTTCACGAAGCTAAGCTGGGTGCTGGATATGCTATATT AAGGAAGGTTAAAACACTTAGGCAATATTTTGTGTCTCGCAGCTTTATAT GTTCTTGCATGGCGAGCCACAACATTGAAAAAAATCCTTGGCCGCAAAAG TGATACACGCGTCCAGGCCGCAGGCTTGTAATCCCCGCGCCGGGCGAAGC AGGTCGTTCGCCAAGAATGACTTCACACGTCGCGTCGTCCTTTCCGTCAC GTGTCGCATTGTTCTTGTGGTTCGGTGCGGAGCGGATCTGAATATCTCAA GACTCTTGACGCGAATCGTGTTTTTGCCCGGGAGTTAGCGCGGACGTTCT CGGCGAGGATGGGACAAGAGCTGTGGCTCGTTTTTCCCGACGATGCCGAG GTGGATACAACCGAAAGAATAGATCGCGCATTAGCTGCCCGCCGCCGGTG TTTCCATACTTCTTTCTGGAAATAAGTCTTTCGGGTTCCTCACGGAGCAT ATTTTCCGACACGTGTTTTTTTCTGCTTATGTCTCCCTAGCTTTCCTCCG CGTTTACCGTGCAACAGAGGCGAGTTTCTACAAGTAAGCAATAATTACTG CTTTCTTGCTTATGTTTTTGTCCCCACTCAAGGCAACTCTGGCGAGAGAG ACTTACGGAGGCACGACATTCAGGGTGGTCAGCATCCAGTCCGCTATCAG GGACTTAAAGGACGACAACTGCCAGCTTCAGATCGTCGTCAATCCGGGCT TTAACGTTGAGGAGTGGATCGTCCTGGACAAGTTGGCGCGGCCAAGTGTG CCGATGGTGATGCTAAACGGCGGGCTTGATAGGGTGAGAGCTTTGTTTTC GATCATCTCGTTGCTCCTCCTGTTGCTTCTGCTGCCGCTGGTGTGTTACA TTTCTTTCTGTATCGGGAGGGCATGCTGTACATTACATGGCAAGACCTCC CACAAACTCACGGCACTGTGCCTTTCAAGCGTCACGTCGCGTAGAGGAAT CCGGACCTAGTGCGACTATAGCTTTCGTTCGCGCCGCGAAACAACTTACT CTATCCAGTTGCTCAAGATGCGCGAAGACAGCCAGGCAGATTTGTTTTAA ACTTTTCTGGTTTCAGACGCATACTAGGTCTACATGTCCTGATTAAATCG AGTATACCGTAACAGCTAATTCCGGCCCCAGCTCCAAAAAATCACTAAAA CCTTTCTCATCGCCTCATACGCATTCATGCGTAAACCTTCCCCTTCTCCC CTCTGTCTGAATCCCCGGCCCTGATGCGAAGCCGTTTCGTCCATTGGCCA TCCATAAATTTGTGAGGGAGGGGTCGTTACGTAATTCTCCCCTTTATTAG GGGGGAAGGGTCCAAATTCGTCCCCTTCCCGGGATCCAATCGTCATCCAC CCGGTCTTAGCGCTTCGAGCGTGATTCCTGATTGCAGTAAAGAGGGGATG GACATGTTTTGTTCCCAAAAGAGAAATAATTTAGCATGTCCCCCTCCACG AACCGGGGGCGTTTTAGCAAGTTCGCCCCTCCCTCCCTATCGTCGGATTA CTCCATTGACCCCCATTACTTAATTGTTTGCGTGTGCCGATCTCAGCTGA GGGGTGGATACTACCCGAGAATATTTTACCCGGGTCTTTACGACGCGACG AAGCGGTTCCTGAAAAACTTCGAGACGGTTTACTACCTCAAGGCCTTACC GGGGGGATGGATTTTTAGAAAAGCGCCGGAGGATTGGCAGGTAAGGATTT TGGGTTGGGTTGGGGCAAGTAAGCACAGCTCCACCGCTACTGGCACTGCC TGTCATGGCCAAGCTATCTGAAAATACTCATCCGGGGGAAACTCTCCCCC GTAGGTATGTCTTCTATAGTATACTAGAAGCGACCGGTAATTGATTTGTT CCTTTAGAGCAGCAAAAACGGGGTGATAAGGCAGCCATTATTTTGGAAAA ATTGCTAAGAAATTGGGCACAAAGGGGACGTTTTATCGGCAACAGAGGGA TGACGGTATTCAGAACCATGACCTTTAACGACAGGGGGTTGGGGGGATGT TGCAAATAGCAAATCGAAGTTTTGTGGCGCGGTATCGAACGAACTCCTTC CGGGGACATATTTCATCAATACTCTGATTAAATGAATCACGTTGAGGGCA CACTACCCTCCACCAGATAATGGAGTCGCAGCCCTATCGTCGGTAGGGAC TATAGATAATTTTGGAGCCCATCCTGAAGTCGAAGACATATTTCTTACAT TCCCGCCGCCCCCCTCTCGTTGTCCCTAATTGTATACTAATTGTCTTCAT CCGACGGGCCGCGGTATTGGAAGATCATCTCAATGAGTCAGTTGGGGAAC AAGCAAGGGCGCCAAGCGGTGGAATCGCGAGTCCTCGAATCCACCGCCGA TCGCCCGGACTACAACCGCGCCCTCAAGGTGGTTCAGGCTGCCGCGCAGC AGCAGCGGGCCCAGAGTAAGGAAAGCTGAGGACTAACGTCCGGGGCGTTG GTAATCATGTAATTAAACTTGGCAATATTTGCTTCGTGTGGCAGCCGTTT TTTGTTCTGTTGATGCGTGTTTGTGAAACGTTTTCCAATAGAAGTAAGGT GATCTTAATAGCTTGATCAGCTGGGTACAACGTCTTCGGTAGACGGACAA AGTAAAGTATTTTATAAATAATATTAGTACATTCGTGAAGGGACGTTCAA ATTTGAACACCTCGCCGCAGCGGTTATTGTTCTGTCCGGTTTACCGAAGA TTTTACCAGAATGATGATTCGACGATCGACGAATAAGTTCCATAGTAAAG CAGCTGACAAAAGTTTAAGTGGTAGACTATACCTGAAAAGGCCTGCCAAA AGGGATAGCCCCGCTACCGACTCGCCAACAGTCGCGCAGTTAAGGGCCAA AGAAATGCGAAAAACATAATATCTTCCTTAGTGTGCATATTGATGCGTAA TCCCGTGGAGTTTCACTGACGCCGGTGGAGAGGTGAGGGTTTGATTTGGC TCAATATTGTTTGTATAAAACGCAATCCATCCGCGATGCTGGTAATGCGA ATTCTCCAAGTTTCAATAGCTTTACAATAATTCCACGCCAGTGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig15839:970..4615+

>mRNA_H-elongata_contig15839.3786.1 ID=mRNA_H-elongata_contig15839.3786.1|Name=mRNA_H-elongata_contig15839.3786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at H-elongata_contig15839:970..4615+ (Himanthalia elongata Himel1 dioecious)
ATGGGACAAGAGCTGTGGCTCGTTTTTCCCGACGATGCCGAGATGGGACA
AGAGCTGTGGCTCGTTTTTCCCGACGATGCCGAGGCAACTCTGGCGAGAG
AGACTTACGGAGGCACGACATTCAGGGTGGTCAGCATCCAGTCCGCTATC
AGGGACTTAAAGGACGACAACTGCCAGCTTCAGATCGTCGTCAATCCGGG
CTTTAACGTTGAGGAGTGGATCGTCCTGGACAAGTTGGCGCGGCCAAGTG
TGCCGATGGTGATGCTAAACGGCGGGCTTGATAGGGCAACTCTGGCGAGA
GAGACTTACGGAGGCACGACATTCAGGGTGGTCAGCATCCAGTCCGCTAT
CAGGGACTTAAAGGACGACAACTGCCAGCTTCAGATCGTCGTCAATCCGG
GCTTTAACGTTGAGGAGTGGATCGTCCTGGACAAGTTGGCGCGGCCAAGT
GTGCCGATGGTGATGCTAAACGGCGGGCTTGATAGGCTGAGGGGTGGATA
CTACCCGAGAATATTTTACCCGGGTCTTTACGACGCGACGAAGCGGTTCC
TGAAAAACTTCGAGACGGTTTACTACCTCAAGGCCTTACCGGGGGGATGG
ATTTTTAGAAAAGCGCCGGAGGATTGGCAGCTGAGGGGTGGATACTACCC
GAGAATATTTTACCCGGGTCTTTACGACGCGACGAAGCGGTTCCTGAAAA
ACTTCGAGACGGTTTACTACCTCAAGGCCTTACCGGGGGGATGGATTTTT
AGAAAAGCGCCGGAGGATTGGCAGATCATCTCAATGAGTCAGTTGGGGAA
CAAGCAAGGGCGCCAAGCGGTGGAATCGCGAGTCCTCGAATCCACCGCCG
ATCGCCCGGACTACAACCGCGCCCTCAAGGTGGTTCAGGCTGCCGCGCAG
CAGCAGCGGGCCCAGAGTAAGGAAAGCTGAATCATCTCAATGAGTCAGTT
GGGGAACAAGCAAGGGCGCCAAGCGGTGGAATCGCGAGTCCTCGAATCCA
CCGCCGATCGCCCGGACTACAACCGCGCCCTCAAGGTGGTTCAGGCTGCC
GCGCAGCAGCAGCGGGCCCAGAGTAAGGAAAGCTGA
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