prot_H-elongata_contig158226.3780.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158226.3780.1
Unique Nameprot_H-elongata_contig158226.3780.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length57
Homology
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BLAST of mRNA_H-elongata_contig158226.3780.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 3.340e-18
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 0 
Query:    3 MIVALTTQLAIAWGAYATFGVGVEDDLLEAYPETGLLTAARVSVSILVTSCYPLQ 57
            M VA+   ++IAWGAYATFGVGV+ DLL+ YP TGLLTAAR+ VS+LVTSCYPLQ
Sbjct:  360 MAVAIAIYMSIAWGAYATFGVGVDGDLLKTYPRTGLLTAARICVSMLVTSCYPLQ 414
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158226.3780.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F5_ECTSI3.340e-1872.73Amino acid/polyamine transporter n=2 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013057Amino acid transporter, transmembrane domainPFAMPF01490Aa_transcoord: 1..57
e-value: 1.3E-6
score: 27.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.694

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158226contigH-elongata_contig158226:1234..1404 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158226.3780.1mRNA_H-elongata_contig158226.3780.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158226 1234..1422 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158226.3780.1 ID=prot_H-elongata_contig158226.3780.1|Name=mRNA_H-elongata_contig158226.3780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MAMIVALTTQLAIAWGAYATFGVGVEDDLLEAYPETGLLTAARVSVSILV
TSCYPLQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM