mRNA_H-elongata_contig158226.3780.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158226.3780.1
Unique NamemRNA_H-elongata_contig158226.3780.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158226.3780.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.330e-18
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   25 MIVALTTQLAIAWGAYATFGVGVEDDLLEAYPETGLLTAARVSVSILVTSCYPLQ 189
            M VA+   ++IAWGAYATFGVGV+ DLL+ YP TGLLTAAR+ VS+LVTSCYPLQ
Sbjct:  360 MAVAIAIYMSIAWGAYATFGVGVDGDLLKTYPRTGLLTAARICVSMLVTSCYPLQ 414
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158226.3780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F5_ECTSI4.330e-1872.73Amino acid/polyamine transporter n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158226contigH-elongata_contig158226:1234..1422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D7G1F5
Preferred nameAVT7
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005310,GO:0005313,GO:0005326,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0006950,GO:0006995,GO:0007034,GO:0007154,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015075,GO:0015171,GO:0015172,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015183,GO:0015189,GO:0015194,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015800,GO:0015801,GO:0015802,GO:0015804,GO:0015807,GO:0015809,GO:0015813,GO:0015817,GO:0015819,GO:0015825,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0022889,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0031667,GO:0031668,GO:0031669,GO:0032329,GO:0032974,GO:0032975,GO:0033554,GO:0034220,GO:0034486,GO:0034490,GO:0034491,GO:0042221,GO:0042493,GO:0042594,GO:0043090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051938,GO:0055085,GO:0061459,GO:0070778,GO:0071496,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071944,GO:0089709,GO:0090454,GO:0090513,GO:0090514,GO:0090515,GO:0090516,GO:0090517,GO:0090518,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1901481,GO:1901482,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size189
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.8537343-CDS-H-elongata_contig158226:1233..14041622929932.8537343-CDS-H-elongata_contig158226:1233..1404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158226 1234..1404 -
1691679213.0620556-CDS-H-elongata_contig158226:1233..14041691679213.0620556-CDS-H-elongata_contig158226:1233..1404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158226 1234..1404 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929932.882704-UTR-H-elongata_contig158226:1404..14221622929932.882704-UTR-H-elongata_contig158226:1404..1422Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158226 1405..1422 -
1691679213.0773423-UTR-H-elongata_contig158226:1404..14221691679213.0773423-UTR-H-elongata_contig158226:1404..1422Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig158226 1405..1422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158226.3780.1prot_H-elongata_contig158226.3780.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158226 1234..1404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158226.3780.1

>prot_H-elongata_contig158226.3780.1 ID=prot_H-elongata_contig158226.3780.1|Name=mRNA_H-elongata_contig158226.3780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MAMIVALTTQLAIAWGAYATFGVGVEDDLLEAYPETGLLTAARVSVSILV
TSCYPLQ
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mRNA from alignment at H-elongata_contig158226:1234..1422-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158226.3780.1 ID=mRNA_H-elongata_contig158226.3780.1|Name=mRNA_H-elongata_contig158226.3780.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig158226:1234..1422- (Himanthalia elongata Himel1 dioecious)
CGTTCGAGAAAAAAAGTTATGGCCATGATTGTGGCTCTGACCACTCAGCT
GGCCATCGCGTGGGGAGCCTATGCGACCTTCGGGGTGGGTGTCGAGGACG
ATCTCCTCGAAGCCTACCCCGAGACCGGCCTCCTCACGGCCGCCAGAGTC
AGTGTGTCCATCCTCGTCACGTCGTGTTACCCGTTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig158226:1234..1422-

>mRNA_H-elongata_contig158226.3780.1 ID=mRNA_H-elongata_contig158226.3780.1|Name=mRNA_H-elongata_contig158226.3780.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig158226:1234..1422- (Himanthalia elongata Himel1 dioecious)
ATGGCCATGATTGTGGCTCTGACCACTCAGCTGGCCATCGCGTGGGGAGC
CTATGCGACCTTCGGGGTGGGTGTCGAGGACGATCTCCTCGAAGCCTACC
CCGAGACCGGCCTCCTCACGGCCGCCAGAGTCAGTGTGTCCATCCTCGTC
ACGTCGTGTTACCCGTTGCAGATGGCCATGATTGTGGCTCTGACCACTCA
GCTGGCCATCGCGTGGGGAGCCTATGCGACCTTCGGGGTGGGTGTCGAGG
ACGATCTCCTCGAAGCCTACCCCGAGACCGGCCTCCTCACGGCCGCCAGA
GTCAGTGTGTCCATCCTCGTCACGTCGTGTTACCCGTTGCAG
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