mRNA_H-elongata_contig158206.3778.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A2U1MPB7_ARTAN (Photosystem I n=40 Tax=Anthemideae TaxID=102810 RepID=A0A2U1MPB7_ARTAN) HSP 1 Score: 329 bits (844), Expect = 3.370e-110 Identity = 169/289 (58.48%), Postives = 193/289 (66.78%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHF--------TVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
DARGSKLMPDKKDFGYSFPCDGPGRGG N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF T + + A + K +KL +KY R++ + K + D+ EI+ K++ PRNSA RL RC+ TGR R YRDFGL H++REM H C+LPG ++SW
Sbjct: 53 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSDPTCIMDTNRNLTSMAKKSLIQREKKRQKLEQKYHSIRRSSKEEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 341
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A6S7L0J9_LACSI (Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7L0J9_LACSI) HSP 1 Score: 329 bits (844), Expect = 2.260e-105 Identity = 168/281 (59.79%), Postives = 189/281 (67.26%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
DARGSKLMPDKKDFGYSFPCDGPGRGG N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF S K +KL +KY R++ + K + D+ EI+ K++ PRNSA RL RC+ TGR R YRDFGL H++REM H C+LPG ++SW
Sbjct: 462 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHF--------------SREKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 728
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A3P6DWV1_BRAOL (Photosystem I n=1 Tax=Brassica oleracea TaxID=3712 RepID=A0A3P6DWV1_BRAOL) HSP 1 Score: 320 bits (821), Expect = 2.580e-105 Identity = 165/291 (56.70%), Postives = 192/291 (65.98%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTY----------AAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
DARGSKLMPDKKDFGYSFPCDGPGRGG N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+ + A + K +KL +KY R++L + + + ++ +IH K++ PRNSA RL RC+ TGR R YRDFGL H++REM C+LPG ++SW
Sbjct: 152 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSLKKEISEIPSLSEKWKIHGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 442
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A6S7LXY5_LACSI (Photosystem I n=1 Tax=Lactuca saligna TaxID=75948 RepID=A0A6S7LXY5_LACSI) HSP 1 Score: 329 bits (844), Expect = 1.350e-104 Identity = 168/281 (59.79%), Postives = 189/281 (67.26%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
DARGSKLMPDKKDFGYSFPCDGPGRGG N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF S K +KL +KY R++ + K + D+ EI+ K++ PRNSA RL RC+ TGR R YRDFGL H++REM H C+LPG ++SW
Sbjct: 540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHF--------------SREKKRQKLEQKYHLIRRSSKKEISKVRSLSDKWEIYGKLQSPPRNSAPTRLHRRCFSTGRPRANYRDFGLSGHILREMVHACLLPGATRSSW 806
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A0D3EEW1_BRAOL (Photosystem I n=2 Tax=Brassica oleracea TaxID=3712 RepID=A0A0D3EEW1_BRAOL) HSP 1 Score: 315 bits (807), Expect = 1.020e-102 Identity = 162/291 (55.67%), Postives = 190/291 (65.29%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTY----------AAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
DARGSKLMPDKKDFGYSFPCDGPGRGG N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RW+DKPVALSIVQARLVGL HF+ + A + K +KL +KY R++ + ++ + ++ +IH K++ PRNS RL RC+ GR R YRDFGL H++REM C+LPG ++SW
Sbjct: 189 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWKDKPVALSIVQARLVGLAHFSDPICIIIIDNKRNLSIMAKKSLIYREKKRQKLEQKYHLIRRSSKKEIREIPSLREKWKIHGKLQSPPRNSGPTRLHRRCFSNGRPRANYRDFGLSGHILREMVQACLLPGATRSSW 479
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A2G3AJJ4_CAPAN (Photosystem I chlorophyll a apoprotein A2 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G3AJJ4_CAPAN) HSP 1 Score: 304 bits (778), Expect = 5.250e-100 Identity = 153/243 (62.96%), Postives = 173/243 (71.19%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKFKKLVEKYSEKRKALLIDFKKADNFIDQMEIHKKIEKLPRNSAKIRLRNRCWRTGRSRGVYRDFGLCRHMIREMAHNCILPGVRKASW 729
DA GSKLMPDKKDF F GN +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+ Y S + K+ + S L + K D+ EI+ K++ LPRNSA RL RC+ TGR R YR FGL H++REM H C+ PG ++SW
Sbjct: 114 DAHGSKLMPDKKDFVIVFRAMAQDEVGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFS--EFNHYGKEKFDSEGEEEAKIGTEISFDSSILKKEISKVPALSDKWEIYGKLQSLPRNSAPTRLHRRCFLTGRPRANYRAFGLSGHILREMVHACLFPGATRSSW 354
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A0R6MFW0_UNDPI (Photosystem I P700 chlorophyll a apoprotein A2 n=71 Tax=Stramenopiles TaxID=33634 RepID=A0A0R6MFW0_UNDPI) HSP 1 Score: 309 bits (791), Expect = 1.980e-97 Identity = 155/194 (79.90%), Postives = 155/194 (79.90%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
DARGSKLMPDKKDFGYSFPCDGPGRGG NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIAST GKF
Sbjct: 540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTTGKF 733
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: Q5QA60_ACOGR (Photosystem I (Fragment) n=2 Tax=Mesangiospermae TaxID=1437183 RepID=Q5QA60_ACOGR) HSP 1 Score: 290 bits (741), Expect = 1.110e-96 Identity = 141/194 (72.68%), Postives = 150/194 (77.32%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
DARG+KLMPDKKDFGYSFPCDGPGRGG N +QFNESS Y+MGWLRDYLWLNSS LINGYNP+GMNSLSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETL WAHERTPLANL+RWRDKPVALSIVQARLVGL HF+VGYI TYAAF+IAST+GKF
Sbjct: 2 DARGAKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHITLWQGNVSQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKF 195
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: B2XT53_HETAK (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT53_HETAK) HSP 1 Score: 305 bits (782), Expect = 4.280e-96 Identity = 153/194 (78.87%), Postives = 153/194 (78.87%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
DARGSKLMPDKKDFGYSFPCDGPGRGG NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGL HF VGYILTYAAFVIAST GKF
Sbjct: 540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLAHFAVGYILTYAAFVIASTTGKF 733
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Match: A0A7T7IGM3_9STRA (Photosystem I P700 chlorophyll a apoprotein A2 n=3 Tax=Stichogloea TaxID=82160 RepID=A0A7T7IGM3_9STRA) HSP 1 Score: 305 bits (782), Expect = 4.280e-96 Identity = 151/194 (77.84%), Postives = 155/194 (79.90%), Query Frame = 1
Query: 1 DARGSKLMPDKKDFGYSFPCDGPGRGG--------------------------------------NAAQFNESSNYIMGWLRDYLWLNSSPLINGYNPYGMNSLSVWAWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWRDKPVALSIVQARLVGLVHFTVGYILTYAAFVIASTAGKF 468
DARGSKLMPDKKDFGYSFPCDGPGRGG NAAQFNESSNY+MGWLRDYLWLNSSPLINGYNPYGMN+LSVWAWMFLFGHL+WATGFMFLISWRGYWQELIETLVWAHERTPLANLVRW+DKPVALSIVQARLVGL HFTVGYILTYAAFVIASTAGKF
Sbjct: 540 DARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLSMFWMLNTIGWVTFYWHWKHVTIWQGNAAQFNESSNYLMGWLRDYLWLNSSPLINGYNPYGMNNLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWKDKPVALSIVQARLVGLAHFTVGYILTYAAFVIASTAGKF 733 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158206.3778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig158206.3778.1 >prot_H-elongata_contig158206.3778.1 ID=prot_H-elongata_contig158206.3778.1|Name=mRNA_H-elongata_contig158206.3778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp MPDKKDFGYSFPCDGPGRGGNAAQFNESSNYIMGWLRDYLWLNSSPLINGback to top mRNA from alignment at H-elongata_contig158206:104..1093+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig158206.3778.1 ID=mRNA_H-elongata_contig158206.3778.1|Name=mRNA_H-elongata_contig158206.3778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=990bp|location=Sequence derived from alignment at H-elongata_contig158206:104..1093+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig158206:104..1093+ >mRNA_H-elongata_contig158206.3778.1 ID=mRNA_H-elongata_contig158206.3778.1|Name=mRNA_H-elongata_contig158206.3778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig158206:104..1093+ (Himanthalia elongata Himel1 dioecious)back to top |