mRNA_H-elongata_contig15820.3777.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 378 bits (970), Expect = 1.340e-128 Identity = 191/264 (72.35%), Postives = 216/264 (81.82%), Query Frame = 1
Query: 1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
+LDD + + SPTSVT KWLL SE++V G++FYC G+ GGDCDELRIQS D+ EVRGHGGS+YF T+VTSWDTPNK PQE YE GRSF+NCVSE + ETC+G+ KND GECRMDII+SEMGY+G+FD+ESYGLTWKVRGFC D SNP VF+TTNVYGDIKNS+IHHMYYGMYSYGHQGGVWTNN+MHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXX GG +AVGIFLHRSSD+ E+YG
Sbjct: 1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG 264
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 345 bits (885), Expect = 7.200e-116 Identity = 167/271 (61.62%), Postives = 193/271 (71.22%), Query Frame = 1
Query: 1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWK--------VRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIY 789
+LDDD + P+ +T WLLA+E+++ G VFYC+GTS GGDC++LRIQS S D++EVRGHGGSLYFEDT+VTSWDTPNK PQE YE GRSF+NCVSE + + CEG KN+ GECRMDII+SE+ YLG+FDSESYG+TWK VRGFC D SNP VFD TNVYGD+ SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLT GGA AVGIFLHRSSD ++
Sbjct: 22 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTRIIASKRCNNVKIFENEVRD------------GGAAAVGIFLHRSSDDAAVF 280
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 360 bits (923), Expect = 3.270e-115 Identity = 167/263 (63.50%), Postives = 195/263 (74.14%), Query Frame = 1
Query: 1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIY 789
+LDDD + P+ +T WLLA+E+++ G VFYC+GTS GGDC++LRIQS S D++EVRGHGGSLYFEDT+VTSWDTPNK PQE YE+GRSF+NCVSE + + CEG KN+ GECRMDII+SE+ YLG+FDSESYG+TWKVRGFC D SNP VF+ TNVYGD+ SDIHH+YYG YSYGHQGGVWTNNKMHDN QYGFDPHDDSDYLTIA GGA A GIFLHRSSD ++
Sbjct: 473 MLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVF 735
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 341 bits (874), Expect = 6.350e-112 Identity = 163/262 (62.21%), Postives = 189/262 (72.14%), Query Frame = 1
Query: 4 LDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIY 789
LDD + + +P ++ KWLL +E+ + G+VFYCRG+SIGGDCDELRIQS TD++EVR HGGS+YFE T+VTSWDTPNKTPQ Y GRSF+NCVSE + E C GQ +N+ GECRMDII+SE+GYLG+FDSESYGLTWKVRGFC D SNP VFDTTNVYG++ SDIHH YYG YSYGHQGGVW NN+MHDNHQYGFDPHDDSDYLT GG A GIFLHRSSD ++
Sbjct: 111 LDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLTSIIASKRCNNVQIYNNEVYD------------GGPFAAGIFLHRSSDYAIVH 360
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 336 bits (861), Expect = 5.830e-111 Identity = 159/265 (60.00%), Postives = 189/265 (71.32%), Query Frame = 1
Query: 1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY-ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
+LD +D + + T+ TGKWLL +++FV G+ YCRG +GG+C ELRI+S + +D+ E+RGHGG+LYFEDT+VTSWD + PQE Y+DGRSFI CVSE ++TC N+ GECRMDIIDSEMGYLG+ SE+YG+TWKVRGFC+D SNP VFD NVYGD+K SDIHHMYYGMYS+GHQGGVWTNN MHDNHQYGFDPHDDSDYL IA GGADA GIFLHRS D E+YG
Sbjct: 35 VLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYG 296
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 332 bits (852), Expect = 2.330e-109 Identity = 164/273 (60.07%), Postives = 187/273 (68.50%), Query Frame = 1
Query: 1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVR---------GFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
+LD + +PTSVT KWLL +E++V G++FYC G+ GGDCDELRIQS D+ EVRGHGGS+YF T+VTSWDTPNK PQE YE GRSF+NCVSE + ETC+G KND GECRMDII+SEMGY+G+FDSESYGLTWKVR GFC D SNP VF+TTNVYGDIKNSDIHHMYYG YSYGHQGGVWTNN+MHDNHQY +A GG DAVGIFLHRSSD+ E+YG
Sbjct: 46 MLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYG 306
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 263 bits (671), Expect = 7.380e-83 Identity = 135/254 (53.15%), Postives = 157/254 (61.81%), Query Frame = 1
Query: 37 TSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
TS TG WLL E++V G G+ GGD DELR+ S N T N +R HGGSL F T V SWDT +P E DGRS+I+ +SE + DETCEG KN GE RMDI SE+GYLG++DSESYGLTWKVRGFC DKSNP VFD NVYG++ +SDIHHM +G+Y+YGHQ G W NKMHDN YGFDPHDDSD+LTI G + GIFLHRSSD + G
Sbjct: 97 TSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 263 bits (671), Expect = 1.340e-81 Identity = 135/254 (53.15%), Postives = 157/254 (61.81%), Query Frame = 1
Query: 37 TSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
TS TG WLL E++V G G+ GGD DELR+ S N T N +R HGGSL F T V SWDT +P E DGRS+I+ +SE + DETCEG KN GE RMDI SE+GYLG++DSESYGLTWKVRGFC DKSNP VFD NVYG++ +SDIHHM +G+Y+YGHQ G W NKMHDN YGFDPHDDSD+LTI G + GIFLHRSSD + G
Sbjct: 97 TSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 349
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 267 bits (683), Expect = 2.670e-80 Identity = 139/266 (52.26%), Postives = 167/266 (62.78%), Query Frame = 1
Query: 1 ILDDDDDIMYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEYESD--ETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
+LD +D+++ S TG WLL ++ V GS+ G GGD LRIQS S DY E+RGHGGSL F DT VTSWDT K Y+ RSFI CVSE +D +TC+G N GECRMDII SEMG +G+ +ESYG++WKVRG+C++ NP VF+ T V GDI +SDI+ MYYG YS+GH GG+WT NKMHDN QYGFDPHDDSD L IA GG AVGIFLHRSSD CE++G
Sbjct: 428 VLDSNDNVVGG--SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWG 691
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 255 bits (652), Expect = 1.030e-78 Identity = 132/251 (52.59%), Postives = 155/251 (61.75%), Query Frame = 1
Query: 46 TGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNEVRGHGGSLYFEDTLVTSWDTPNKTPQEVYEDGRSFINCVSEY--ESDETCEGQPKNDYGECRMDIIDSEMGYLGWFDSESYGLTWKVRGFCADKSNPGVFDTTNVYGDIKNSDIHHMYYGMYSYGHQGGVWTNNKMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGADAVGIFLHRSSDSCEIYG 792
TG WLL E++V G GT GGD DELR+ S + T Y +R HGGSL F T V SWDT +P E DGRS+I+ VSE + DETCEG KN GE RMDI +SE+GYLG+ DSESYGLTWKVRGFC DKSNP +FD NVYG++ +SDIHH+ +G+Y+YGHQ G W NKMHDN YGFDPHDDSD+LTI G + GIFLHRSSD + G
Sbjct: 104 TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKG 353 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15820.3777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15820.3777.1 >prot_H-elongata_contig15820.3777.1 ID=prot_H-elongata_contig15820.3777.1|Name=mRNA_H-elongata_contig15820.3777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp MYSPTSVTGKWLLASEMFVLRGSVFYCRGTSIGGDCDELRIQSINSTDYNback to top mRNA from alignment at H-elongata_contig15820:3159..4146- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15820.3777.1 ID=mRNA_H-elongata_contig15820.3777.1|Name=mRNA_H-elongata_contig15820.3777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=988bp|location=Sequence derived from alignment at H-elongata_contig15820:3159..4146- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15820:3159..4146- >mRNA_H-elongata_contig15820.3777.1 ID=mRNA_H-elongata_contig15820.3777.1|Name=mRNA_H-elongata_contig15820.3777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig15820:3159..4146- (Himanthalia elongata Himel1 dioecious)back to top |