prot_H-elongata_contig158139.3774.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158139.3774.1
Unique Nameprot_H-elongata_contig158139.3774.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length80
Homology
[Close]
BLAST of mRNA_H-elongata_contig158139.3774.1 vs. uniprot
Match: D8LGD5_ECTSI (GRIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD5_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 8.110e-29
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 0 
Query:    1 RDLGSSESASVNVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQLTRIEVESVEARIAELERTMMGRAGTMVGG 74
            R+LGS E+A +NVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQ T+ EV  VEARI ELE+TM+ RAG+MVGG
Sbjct:   60 RNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGG 133
[Close]
BLAST of mRNA_H-elongata_contig158139.3774.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.260e-27
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 0 
Query:    1 RDLGSSESASVNVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQLTRIEVESVEARIAELERTMMGRAGTMVGGAG 76
            R+LGS E+A +NVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQ T+ EV  VEARI ELE+TM+ RAG+MVGGAG
Sbjct: 1633 RNLGSGETAPINVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQFTKQEVADVEARITELEKTMVRRAGSMVGGAG 1708
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158139.3774.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD5_ECTSI8.110e-2979.73GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KSR4_9PHAE2.260e-2780.26GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
IPR000237GRIP domainSMARTSM007551gripcoord: 9..56
e-value: 3.5E-5
score: 33.2
IPR000237GRIP domainPFAMPF01465GRIPcoord: 11..51
e-value: 6.6E-13
score: 48.3
IPR000237GRIP domainPROSITEPS50913GRIPcoord: 6..56
score: 13.045

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158139contigH-elongata_contig158139:2..1370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158139.3774.1mRNA_H-elongata_contig158139.3774.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158139 2..1370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158139.3774.1 ID=prot_H-elongata_contig158139.3774.1|Name=mRNA_H-elongata_contig158139.3774.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RDLGSSESASVNVAYLKSAVVRYMSTRDAGEQRSLLRVISTILQLTRIEV
ESVEARIAELERTMMGRAGTMVGGAGRRVG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000237GRIP_dom