mRNA_H-elongata_contig15807.3770.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15807.3770.1
Unique NamemRNA_H-elongata_contig15807.3770.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: D7FXK3_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK3_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 1.450e-120
Identity = 197/296 (66.55%), Postives = 227/296 (76.69%), Query Frame = 1
Query:    1 MLNRAGLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAE-LTQAVNSDPGTDAGFSVSDEK--TDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYCHK 879
            M +R G+    WEA R++LLR LR VFGH+ FRG QEEA+REV SG DALVVMPTGGGKSLCYQLPAV   G+C+V+SPLIALTEDQLRGL EKG+ A S  SS+ S++RA  VM + L     S  G      V+ EK   +  A G  AA + KLLYVTPE L K G L +AL  LA RG++SLLAVDEAHCVSTWGHDFRPAY ++GAFRKK +KGVPC+ALTATAT+EVC D+ KQLG R GSRVLKTSFNR EIHLSV YKDAM+ GGAL+ LV FL+E+RGQSGIVYCHK
Sbjct:    1 MAHRGGVADVLWEARREKLLRALRDVFGHQGFRGKQEEAMREVSSGHDALVVMPTGGGKSLCYQLPAVVADGVCVVISPLIALTEDQLRGLYEKGVEAASLTSSSASRSRAAAVMDDILAYGGGSGSGHSTKEGVTSEKGGPNSRADGARAAPKIKLLYVTPEKLAKGGELTTALAGLAKRGLISLLAVDEAHCVSTWGHDFRPAYLELGAFRKKHLKGVPCLALTATATEEVCADIKKQLGFREGSRVLKTSFNRAEIHLSVHYKDAMD-GGALEHLVGFLRERRGQSGIVYCHK 295          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A5D2IR01_GOSTO (Helicase ATP-binding domain-containing protein n=7 Tax=Gossypium TaxID=3633 RepID=A0A5D2IR01_GOSTO)

HSP 1 Score: 214 bits (544), Expect = 2.240e-64
Identity = 126/286 (44.06%), Postives = 175/286 (61.19%), Query Frame = 1
Query:   16 GLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            G  G   +  R+ L++ LR  FGH +FRGNQ EA+  + SG D   +MPTGGGKS+CYQ+PA+A  GI +V+SPLIAL E+Q+  L+EKGI AE  +S+  S+ R  K+  +L +   S                            +LLYVTPE++  SG + S L+ +  RG+++L+AVDEAHC+S+WGHDFRP+YRK+ + R + ++ VP +ALTATA  +V +DV+  L + +   VLK+SFNRP I+  VRYKD M+   A  DL   LK       IVYC
Sbjct:   12 GAKGKQRKCGREALVKLLRWNFGHPDFRGNQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVISPLIALMENQVMALKEKGIAAEFLSSTQTSQLR-NKIHEDLDRGQPS---------------------------IRLLYVTPELIATSGFM-SKLKKIHGRGLLNLIAVDEAHCISSWGHDFRPSYRKLSSLRNQ-LQDVPILALTATAIPKVQKDVIDSLNL-QNPLVLKSSFNRPNIYYEVRYKDLMDD--AYADLCDVLKSAGDVCAIVYC 264          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A2I0IIB1_PUNGR (Helicase ATP-binding domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IIB1_PUNGR)

HSP 1 Score: 212 bits (539), Expect = 2.370e-63
Identity = 129/290 (44.48%), Postives = 174/290 (60.00%), Query Frame = 1
Query:   22 VGGSWEAHRDE------LLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
             GGS +  R +      L++ LR  FGH  FRG Q EA+  V SG D   +MPTGGGKS+CYQ+PA+A  GI +VV PLIAL E+Q+  L+EKGI AE  +S+  S A+  K+  +L          D+G                     +LLYVTPE++  +G + S L  + SRG+++L+A+DEAHC+STWGHDFRP+YRK+ + R     G+P +ALTATA  +V  DV++ LG++R   VLK+SFNRP I+  VRYKD +    A  DL   LK      GI+YC
Sbjct:   11 AGGSDKKRRQQPHGKEALVKLLRWHFGHAEFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPAMARPGIVLVVCPLIALMENQVTALKEKGIAAEYLSSTQTSHAK-NKIHEDL----------DSGKPT-----------------LRLLYVTPELIATAGFM-SKLTKIYSRGLLNLVAIDEAHCISTWGHDFRPSYRKLSSLRN-HFPGIPILALTATAVPKVQNDVIESLGLQRPL-VLKSSFNRPNIYYEVRYKDILNDVYA--DLCNLLKTSGNVCGIIYC 267          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A830CNM3_9LAMI (DNA helicase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CNM3_9LAMI)

HSP 1 Score: 213 bits (541), Expect = 4.690e-63
Identity = 124/276 (44.93%), Postives = 173/276 (62.68%), Query Frame = 1
Query:   46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            ++ L++ LR  FG+ +FRG Q EA++ V SG D   +MPTGGGKS+CYQ+PA+A +GI +VVSPLIA  E+Q+  L+EKGI AE  +S+  +KA+  ++  +L      D G  +                      +LLYVTPE++  +G +A  L  +  RG++SL+A+DEAHCVSTWGHDFRP+YRK+ + R   + G+P +ALTATA  +V EDVM+ L + R   VLK+SFNRP I+  VRYKD ++      DL  +LK       IVYC
Sbjct:   21 KEALVKLLRWHFGYSDFRGKQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKQGIVLVVSPLIACQENQVMALKEKGIAAEYLSSTQTAKAK-NEIYEKL------DSGKPS---------------------LRLLYVTPELIATAGFMAK-LTKIHGRGLLSLIAIDEAHCVSTWGHDFRPSYRKLSSLRN-HLPGIPVLALTATAVPKVQEDVMRSLCL-RNPLVLKSSFNRPNIYYEVRYKDLLDD--PYSDLCNYLKTHGNNCAIVYC 263          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A0D2PBS2_GOSRA (ATP-dependent DNA helicase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2PBS2_GOSRA)

HSP 1 Score: 214 bits (544), Expect = 7.350e-62
Identity = 126/286 (44.06%), Postives = 175/286 (61.19%), Query Frame = 1
Query:   16 GLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            G  G   +  R+ L++ LR  FGH +FRGNQ EA+  + SG D   +MPTGGGKS+CYQ+PA+A  GI +V+SPLIAL E+Q+  L+EKGI AE  +S+  S+ R  K+  +L +   S                            +LLYVTPE++  SG + S L+ +  RG+++L+AVDEAHC+S+WGHDFRP+YRK+ + R + ++ VP +ALTATA  +V +DV+  L + +   VLK+SFNRP I+  VRYKD M+   A  DL   LK       IVYC
Sbjct:   12 GAKGKQRKCGREALVKLLRWNFGHPDFRGNQLEAIEAILSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVISPLIALMENQVMALKEKGIAAEFLSSTQTSQLR-NKIHEDLDRGQPS---------------------------IRLLYVTPELIATSGFM-SKLKKIHGRGLLNLIAVDEAHCISSWGHDFRPSYRKLSSLRNQ-LQDVPILALTATAIPKVQKDVIDSLNL-QNPLVLKSSFNRPNIYYEVRYKDLMDD--AYADLCDVLKSAGDVCAIVYC 264          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: UPI0020092B22 (ATP-dependent DNA helicase Q-like 3 isoform X5 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020092B22)

HSP 1 Score: 214 bits (544), Expect = 2.540e-61
Identity = 124/276 (44.93%), Postives = 169/276 (61.23%), Query Frame = 1
Query:   46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            ++ L++ LR  FGH +FRGNQ EA++ V SG D   +MPTGGGKSLCYQ+PA+A  GI +VVSPLIAL E+Q+  L+EKG+  E  +S+   K +  K+   L     S                            +LLYVTPE++  SG + S L  +  RG+++L+A+DEAHCVSTWGHDFRP+YRK+ + R   + G+P +ALTATA  +V EDV+K L +++   VLK+SFNRP I+  VRYKD M+      D+  +LK       IVYC
Sbjct:   21 KEALVKLLRWHFGHSDFRGNQLEAIQAVLSGRDCFCLMPTGGGKSLCYQIPALAKPGIVLVVSPLIALMENQVMALKEKGVAVEYLSSTQTVKVK-NKIYENLESGKPS---------------------------LQLLYVTPELIATSGFM-SKLMKIHGRGLLNLIAIDEAHCVSTWGHDFRPSYRKLSSLRNN-LPGIPVLALTATAVPKVQEDVIKSLSLQKPL-VLKSSFNRPNIYYEVRYKDLMDD--PYSDICNYLKSCGNVCAIVYC 263          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: UPI0009BDE54B (ATP-dependent DNA helicase Q-like 3 isoform X1 n=3 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009BDE54B)

HSP 1 Score: 216 bits (550), Expect = 3.380e-61
Identity = 129/276 (46.74%), Postives = 170/276 (61.59%), Query Frame = 1
Query:   46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            R+ELL  LR  FGH +FRG Q +A+  V  G D   +MPTGGGKSLCYQ+PAVA KGI +VVSPLIAL E+Q+  L++ GIRAE  +SS   +A+  K+  +L      D G  +                      +LLYVTPE++  +G +   L+ L  R ++ L+AVDEAHC+S WGHDFRP+YRK+ + RK R+ GVP +ALTATA  +V +DV++ L M+    VLK SFNRP I+  VRYKD ++   A  DL+  LK       IVYC
Sbjct:   21 REELLDILRHHFGHSDFRGRQLDAIEAVLCGKDCFCLMPTGGGKSLCYQVPAVAQKGITLVVSPLIALMENQVTALKKNGIRAEYLSSSQNPQAK-EKIYEDL------DSGRPS---------------------LRLLYVTPELIATNGFMYKLLK-LHGRSLLQLIAVDEAHCISAWGHDFRPSYRKLSSLRK-RLPGVPILALTATAVPKVQKDVIESLCMQHPL-VLKASFNRPNIYYEVRYKDLLDD--AYADLLTLLKTSGNVCSIVYC 263          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A6J1HSL2_CUCMA (ATP-dependent DNA helicase n=9 Tax=Cucurbita TaxID=3660 RepID=A0A6J1HSL2_CUCMA)

HSP 1 Score: 214 bits (546), Expect = 7.900e-61
Identity = 126/288 (43.75%), Postives = 174/288 (60.42%), Query Frame = 1
Query:   10 RAGLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            R  +  G+ E   + L++ LR  FGH  FRG Q E ++ V SG D   +MPTGGGKS+CYQ+PA+ATKGI +VV PLIAL E+Q+  L+EKGI AE  +S+   + +  K+  +L          D+G                     +LLYVTPE++   G +A  ++ + SRG++SL+A+DEAHC+STWGHDFRP YRK+ + R  R+  VP +ALTATA  +V +DV+  LG+ +   VL +SFNRP I+  VRYKD ++    L DL   LK      GI+YC
Sbjct:    9 RGSIGPGNHEYSNESLVKLLRWHFGHSEFRGKQLETIKAVLSGKDCFCLMPTGGGKSVCYQIPALATKGIVLVVCPLIALMENQVMALKEKGISAEYLSSTQSIQDK-KKIHEDL----------DSGKPT-----------------LRLLYVTPELIATPGFMAKLMK-IYSRGLLSLIAIDEAHCISTWGHDFRPGYRKLSSLRS-RLPNVPILALTATAAPKVQKDVIASLGL-QNPLVLMSSFNRPNIYYEVRYKDLLDD--PLADLAKQLKASGDVCGIIYC 263          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A5B7BZP2_DAVIN (DNA helicase n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BZP2_DAVIN)

HSP 1 Score: 203 bits (516), Expect = 3.770e-60
Identity = 119/276 (43.12%), Postives = 166/276 (60.14%), Query Frame = 1
Query:   46 RDELLRTLRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            ++ L++ LR  FGH  FRGNQ EA+  V SG D   +MPTGGGKS+CYQ+PA++  G  +VV PLIAL E+Q+  L+EKGI AE  +S+  ++AR  K+  +L     S                            +LLYVTPE++   G + S L  +  RG+++L+A+DEAHC+STWGHDFRP+YRK+ + R  R+  VP +ALTATA  +V +DV++ L + +   VLK+SFNRP I+  VRYKD ++      DL   LK       I+YC
Sbjct:   21 KEALVKLLRWHFGHSEFRGNQLEAIEAVISGRDCFCLMPTGGGKSMCYQIPALSKTGFVLVVCPLIALMENQVMALKEKGIAAEYLSSTQTAEAR-NKIHEDLESGKPS---------------------------LRLLYVTPELIATPGFM-SKLTKIHGRGLLNLIAIDEAHCISTWGHDFRPSYRKLSSLRS-RLPNVPILALTATAVPKVQKDVIESLCL-QNPLVLKSSFNRPNIYYEVRYKDLLDD--PYVDLTNLLKSCGHVCAIIYC 263          
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Match: A0A835QB61_VANPL (ATP-dependent DNA helicase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QB61_VANPL)

HSP 1 Score: 206 bits (525), Expect = 5.760e-60
Identity = 124/269 (46.10%), Postives = 161/269 (59.85%), Query Frame = 1
Query:   67 LRRVFGHENFRGNQEEALREVFSGSDALVVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAESFNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAGRTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFRPAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTSFNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYC 873
            L++ FGH  FRG Q EA+  V SG D   +MPTGGGKS+CYQ+PA+AT GI +VVSPLIAL E+Q+  L+ KGI AE  +S   S  +  K+  +LT    S                            KLLYVTPE+L   G  A  L+ L +RGM+SL+AVDEAHC+STWGHDFRP+YRK+ + R   +  VP IALTATA  +V +DV+  L +R    +L+ SFNRP I+  VR+KD +  G A  DL+  L+       I+YC
Sbjct:   24 LKQYFGHSGFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALATSGIVLVVSPLIALMENQVTALKAKGICAEFLSSMQMSHTK-EKIHEDLTSGKPS---------------------------IKLLYVTPELLATVGFTAKLLK-LYNRGMLSLIAVDEAHCISTWGHDFRPSYRKLSSLRV-HLPDVPIIALTATAVPKVQKDVIDSLQLRHPL-ILRASFNRPNIYYEVRFKDLL--GNAYTDLLSLLQSSGEVCSIIYC 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15807.3770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXK3_ECTSI1.450e-12066.55ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A5D2IR01_GOSTO2.240e-6444.06Helicase ATP-binding domain-containing protein n=7... [more]
A0A2I0IIB1_PUNGR2.370e-6344.48Helicase ATP-binding domain-containing protein n=1... [more]
A0A830CNM3_9LAMI4.690e-6344.93DNA helicase n=1 Tax=Phtheirospermum japonicum Tax... [more]
A0A0D2PBS2_GOSRA7.350e-6244.06ATP-dependent DNA helicase n=1 Tax=Gossypium raimo... [more]
UPI0020092B222.540e-6144.93ATP-dependent DNA helicase Q-like 3 isoform X5 n=1... [more]
UPI0009BDE54B3.380e-6146.74ATP-dependent DNA helicase Q-like 3 isoform X1 n=3... [more]
A0A6J1HSL2_CUCMA7.900e-6143.75ATP-dependent DNA helicase n=9 Tax=Cucurbita TaxID... [more]
A0A5B7BZP2_DAVIN3.770e-6043.12DNA helicase n=1 Tax=Davidia involucrata TaxID=169... [more]
A0A835QB61_VANPL5.760e-6046.10ATP-dependent DNA helicase n=1 Tax=Vanilla planifo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15807contigH-elongata_contig15807:30..2254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.0
Seed ortholog evalue2e-102
Seed eggNOG ortholog2880.D7FXK3
KEGG koko:K10901
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-28_002030.1
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size879
Cds size879
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15807.3770.1prot_H-elongata_contig15807.3770.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15807 30..2254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.5942001-CDS-H-elongata_contig15807:29..1191622929931.5942001-CDS-H-elongata_contig15807:29..119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 30..119 -
1691679212.748346-CDS-H-elongata_contig15807:29..1191691679212.748346-CDS-H-elongata_contig15807:29..119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 30..119 -
1622929931.6047404-CDS-H-elongata_contig15807:509..6111622929931.6047404-CDS-H-elongata_contig15807:509..611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 510..611 -
1691679212.7623425-CDS-H-elongata_contig15807:509..6111691679212.7623425-CDS-H-elongata_contig15807:509..611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 510..611 -
1622929931.6169193-CDS-H-elongata_contig15807:916..10701622929931.6169193-CDS-H-elongata_contig15807:916..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 917..1070 -
1691679212.773007-CDS-H-elongata_contig15807:916..10701691679212.773007-CDS-H-elongata_contig15807:916..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 917..1070 -
1622929931.6273828-CDS-H-elongata_contig15807:1365..16371622929931.6273828-CDS-H-elongata_contig15807:1365..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 1366..1637 -
1691679212.7818675-CDS-H-elongata_contig15807:1365..16371691679212.7818675-CDS-H-elongata_contig15807:1365..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 1366..1637 -
1622929931.6407735-CDS-H-elongata_contig15807:1866..20161622929931.6407735-CDS-H-elongata_contig15807:1866..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 1867..2016 -
1691679212.7934523-CDS-H-elongata_contig15807:1866..20161691679212.7934523-CDS-H-elongata_contig15807:1866..2016Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 1867..2016 -
1622929931.6522253-CDS-H-elongata_contig15807:2143..22541622929931.6522253-CDS-H-elongata_contig15807:2143..2254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 2144..2254 -
1691679212.8027313-CDS-H-elongata_contig15807:2143..22541691679212.8027313-CDS-H-elongata_contig15807:2143..2254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15807 2144..2254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15807.3770.1

>prot_H-elongata_contig15807.3770.1 ID=prot_H-elongata_contig15807.3770.1|Name=mRNA_H-elongata_contig15807.3770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MLNRAGLVGGSWEAHRDELLRTLRRVFGHENFRGNQEEALREVFSGSDAL
VVMPTGGGKSLCYQLPAVATKGICIVVSPLIALTEDQLRGLREKGIRAES
FNSSAGSKARATKVMAELTQAVNSDPGTDAGFSVSDEKTDGIAGGVGAAG
RTKLLYVTPEMLVKSGRLASALEALASRGMVSLLAVDEAHCVSTWGHDFR
PAYRKIGAFRKKRMKGVPCIALTATATKEVCEDVMKQLGMRRGSRVLKTS
FNRPEIHLSVRYKDAMESGGALKDLVCFLKEKRGQSGIVYCHK
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mRNA from alignment at H-elongata_contig15807:30..2254-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15807.3770.1 ID=mRNA_H-elongata_contig15807.3770.1|Name=mRNA_H-elongata_contig15807.3770.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2225bp|location=Sequence derived from alignment at H-elongata_contig15807:30..2254- (Himanthalia elongata Himel1 dioecious)
ATGCTGAACCGCGCAGGCTTAGTCGGGGGTTCGTGGGAAGCGCATCGTGA TGAGCTACTGCGGACGCTGCGCCGGGTCTTCGGGCACGAAAACTTTCGTG GGAATCAAGAGGTGGGTACAGATCTCTCCTCCCTTCGAGGATTTCGCTCC GTTCTTGTTCTCGAACTTCCTCGCCCCCCGCACAGCAAAGAACCCATGAC AGACACGATGAGTTGTGTCGCCGTATACTGGCGTACAGGAGGCGTTGCGG GAAGTCTTCAGCGGAAGCGACGCCCTCGTGGTGATGCCCACGGGAGGCGG CAAGTCTCTCTGCTATCAGCTGCCGGCGGTTGCAACGAAAGGGATCTGCA TCGTCGTCAGCCCGCTGATCGCACTGACCGAGGACCAGGTTAGCGATGAC CGTTGCGGTACATTCGTTTCTGCAGTTACGGTACACGATACTCCTCAGCC GCCGTTGTTCGAGCAACCATCCGGGGACTGTAGTCCCTCGAGGCCTTTCG TGAACGCTTGCGCTCTCCCGTCTTCCTTTCGCTCCCTAGGACATATGATG TTGCATCGGCATTGTCTTTTCAGCTAACACTTGGACGCCGATTATGCTCT CCGTACACCTATCGTAGCTCCGGGGCCTACGCGAGAAGGGAATCCGAGCG GAATCATTCAACTCCTCCGCGGGCTCAAAGGCGCGCGCCACGAAGGTCAT GGCCGAACTCACGCAAGCCGTTAACAGTGACCCCGGTACCGATGCTGGAT TCTCAGTTAGCGACGAAAAAACTGACGGAATCGCGGGGGGCGTAGGAGCA GCGGGACGCACGAAGCTGCTGTACGTGACGCCGGAGATGCTGGTGAAGAG CGGCAGACTAGCTTCGGCACTCGAGGCGCTGGCGTCAAGGTGTCGTGAGA TATATGTACCGTAGCGCTCATGGCGCGGAGACGAAGCGGCAGCCATGCTC CCAGGGTATGGATGGTGGCCTATTTTGTATATTTCCTTTAGTGGCTGCTT CTTAGATGCCGCCCAAGGCTTCCATTTTTCCCTTCTCGCGGTCGCTAGGC GATGGAATCGTCTTAAGGGTTGCGATGCCTCTGCGCCGAACCGCACCCGA GGTTTTTTAATTTTGCATGCGGCTAGCACGTGGGGAGTCAGAGTCAGAGT CTTCTAGTGCGCCGCAACCCTTTCTCGCTCTCAGGGGTATGGTAAGCCTT CTGGCCGTCGACGAGGCGCATTGCGTGAGTACGTGGGGTCACGACTTCCG CCCGGCGTACCGGAAGATCGGGGCCTTCCGTAAGAAGCGCATGAAGGGGG TCCCTTGCATCGCGCTGACGGCAACGGCGACAAAGGAGGTCTGCTCCGCT CGAATCTGTAGTGTGTGAAGAGCCCTGGTATGACTCGTCTCGATTTTTGC GCGCTTGTTGCGGGCGTCCGAGCCCGCGCGATGATGGATGATGTTCAGAC CCCGCCCCGCGCACCTCCTTAATGTACACGGGTATGTTGCCCACTGAAAT ATTTGCCTTTTGCTGGGGAAAAGAGAGCCCCCCATTCATTTGCACCCGAA AAGGTTTCGAACTATCGCCGCGTGCTCATGGCTTGGTACAAAAGATAACG GCGCTCACCCGGGCGCGTCTCCCTATACGTCGACAACTTTCAGGTGTGCG AGGACGTCATGAAACAGCTCGGGATGCGAAGAGGGTCTCGCGTGCTCAAA ACGTCATTCAATCGTCCGGAAATTCACCTCTCCGTCCGCTACAAGGTACG GGTTTTGATGATCGCTTGAGGCTTTTTCCACTCAACGGGGGTCGGCTCAA CGGCGTGTGTCGACTCCACTCGTTTGAGTTGATGGGGGTGACACCGAGCG CCTTCGACCGACACCCACACTGGCTAAATATGCAACAAACAAAAACTGGC ATTAAGGATCGCGTGGCGTCGTTCGCGGGGCAACCTATCTGGTGGTGGAG GAAGGAGGAGCACATCGATGTTCACTGGCTACTGTTTTATCCGGCTCTTT CTGGAGTAGGTGATGACGCTACCTTCCCACCCGAGCCACGATTTCTACGA GTGCTTCTTACACTTGAGCGCAGGTTTCCCCGGGTCTTCTCCGGCGTGAT TATACTCTCGTCGCTGGTATCCGTTCGCTAATCAGGATGCCATGGAAAGC GGTGGTGCGTTGAAAGACCTAGTGTGCTTTCTCAAGGAAAAGAGAGGACA GTCTGGCATCGTTTACTGCCACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig15807:30..2254-

>mRNA_H-elongata_contig15807.3770.1 ID=mRNA_H-elongata_contig15807.3770.1|Name=mRNA_H-elongata_contig15807.3770.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig15807:30..2254- (Himanthalia elongata Himel1 dioecious)
ATGCTGAACCGCGCAGGCTTAGTCGGGGGTTCGTGGGAAGCGCATCGTGA
TGAGCTACTGCGGACGCTGCGCCGGGTCTTCGGGCACGAAAACTTTCGTG
GGAATCAAGAGATGCTGAACCGCGCAGGCTTAGTCGGGGGTTCGTGGGAA
GCGCATCGTGATGAGCTACTGCGGACGCTGCGCCGGGTCTTCGGGCACGA
AAACTTTCGTGGGAATCAAGAGGAGGCGTTGCGGGAAGTCTTCAGCGGAA
GCGACGCCCTCGTGGTGATGCCCACGGGAGGCGGCAAGTCTCTCTGCTAT
CAGCTGCCGGCGGTTGCAACGAAAGGGATCTGCATCGTCGTCAGCCCGCT
GATCGCACTGACCGAGGACCAGGAGGCGTTGCGGGAAGTCTTCAGCGGAA
GCGACGCCCTCGTGGTGATGCCCACGGGAGGCGGCAAGTCTCTCTGCTAT
CAGCTGCCGGCGGTTGCAACGAAAGGGATCTGCATCGTCGTCAGCCCGCT
GATCGCACTGACCGAGGACCAGCTCCGGGGCCTACGCGAGAAGGGAATCC
GAGCGGAATCATTCAACTCCTCCGCGGGCTCAAAGGCGCGCGCCACGAAG
GTCATGGCCGAACTCACGCAAGCCGTTAACAGTGACCCCGGTACCGATGC
TGGATTCTCAGTTAGCGACGAAAAAACTGACGGAATCGCGGGGGGCGTAG
GAGCAGCGGGACGCACGAAGCTGCTGTACGTGACGCCGGAGATGCTGGTG
AAGAGCGGCAGACTAGCTTCGGCACTCGAGGCGCTGGCGTCAAGCTCCGG
GGCCTACGCGAGAAGGGAATCCGAGCGGAATCATTCAACTCCTCCGCGGG
CTCAAAGGCGCGCGCCACGAAGGTCATGGCCGAACTCACGCAAGCCGTTA
ACAGTGACCCCGGTACCGATGCTGGATTCTCAGTTAGCGACGAAAAAACT
GACGGAATCGCGGGGGGCGTAGGAGCAGCGGGACGCACGAAGCTGCTGTA
CGTGACGCCGGAGATGCTGGTGAAGAGCGGCAGACTAGCTTCGGCACTCG
AGGCGCTGGCGTCAAGGGGTATGGTAAGCCTTCTGGCCGTCGACGAGGCG
CATTGCGTGAGTACGTGGGGTCACGACTTCCGCCCGGCGTACCGGAAGAT
CGGGGCCTTCCGTAAGAAGCGCATGAAGGGGGTCCCTTGCATCGCGCTGA
CGGCAACGGCGACAAAGGAGGGGTATGGTAAGCCTTCTGGCCGTCGACGA
GGCGCATTGCGTGAGTACGTGGGGTCACGACTTCCGCCCGGCGTACCGGA
AGATCGGGGCCTTCCGTAAGAAGCGCATGAAGGGGGTCCCTTGCATCGCG
CTGACGGCAACGGCGACAAAGGAGGTGTGCGAGGACGTCATGAAACAGCT
CGGGATGCGAAGAGGGTCTCGCGTGCTCAAAACGTCATTCAATCGTCCGG
AAATTCACCTCTCCGTCCGCTACAAGGTGTGCGAGGACGTCATGAAACAG
CTCGGGATGCGAAGAGGGTCTCGCGTGCTCAAAACGTCATTCAATCGTCC
GGAAATTCACCTCTCCGTCCGCTACAAGGATGCCATGGAAAGCGGTGGTG
CGTTGAAAGACCTAGTGTGCTTTCTCAAGGAAAAGAGAGGACAGTCTGGC
ATCGTTTACTGCCACAAGGATGCCATGGAAAGCGGTGGTGCGTTGAAAGA
CCTAGTGTGCTTTCTCAAGGAAAAGAGAGGACAGTCTGGCATCGTTTACT
GCCACAAG
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