prot_H-elongata_contig158068.3769.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig158068.3769.1
Unique Nameprot_H-elongata_contig158068.3769.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
[Close]
BLAST of mRNA_H-elongata_contig158068.3769.1 vs. uniprot
Match: A0A6A3HMM6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HMM6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-5
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 0 
Query:    1 DYALVARV-RKPGRVHKLVKTWAGPWRVVPRGSEHVRVVEDIVTGETQEVHVVRMRLYAVSSLVVGAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVQIAW 105
            D+ L +RV  KPG  +KL  TW G +RVV R   H   V  +VTG+ Q+VH  R+++YA  SL V     ++ +    QG     D +   +    + +Y + ++W
Sbjct:   97 DFVLRSRVDEKPG--NKLQVTWIGLYRVV-RADSHSFRVHHLVTGDEQDVHASRLKMYADDSLEV---TEQLLDHVASQGILLAVDSLKEHRWNEAINDYEILVSW 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158068.3769.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A3HMM6_9STRA1.750e-533.02Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158068contigH-elongata_contig158068:1057..1374 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158068.3769.1mRNA_H-elongata_contig158068.3769.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig158068 1057..1376 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig158068.3769.1 ID=prot_H-elongata_contig158068.3769.1|Name=mRNA_H-elongata_contig158068.3769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
DYALVARVRKPGRVHKLVKTWAGPWRVVPRGSEHVRVVEDIVTGETQEVH
VVRMRLYAVSSLVVGAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYR
VQIAWV
back to top