mRNA_H-elongata_contig158068.3769.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig158068.3769.1
Unique NamemRNA_H-elongata_contig158068.3769.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig158068.3769.1 vs. uniprot
Match: A0A6A3HMM6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HMM6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.750e-5
Identity = 35/106 (33.02%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:    1 DYALVARV-RKPGRVHKLVKTWAGPWRVVPRGSEHVRVVEDIVTGETQEVHVVRMRLYAVSSLVVGAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYRVQIAW 315
            D+ L +RV  KPG  +KL  TW G +RVV R   H   V  +VTG+ Q+VH  R+++YA  SL V     ++ +    QG     D +   +    + +Y + ++W
Sbjct:   97 DFVLRSRVDEKPG--NKLQVTWIGLYRVV-RADSHSFRVHHLVTGDEQDVHASRLKMYADDSLEV---TEQLLDHVASQGILLAVDSLKEHRWNEAINDYEILVSW 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig158068.3769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A3HMM6_9STRA1.750e-533.02Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig158068contigH-elongata_contig158068:1057..1376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929931.5610483-CDS-H-elongata_contig158068:1056..13741622929931.5610483-CDS-H-elongata_contig158068:1056..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158068 1057..1374 +
1691679212.7376778-CDS-H-elongata_contig158068:1056..13741691679212.7376778-CDS-H-elongata_contig158068:1056..1374Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig158068 1057..1374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig158068.3769.1prot_H-elongata_contig158068.3769.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig158068 1057..1374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig158068.3769.1

>prot_H-elongata_contig158068.3769.1 ID=prot_H-elongata_contig158068.3769.1|Name=mRNA_H-elongata_contig158068.3769.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
DYALVARVRKPGRVHKLVKTWAGPWRVVPRGSEHVRVVEDIVTGETQEVH
VVRMRLYAVSSLVVGAEVREVFEMTKHQGEFEMADVISVGKDPARVGEYR
VQIAWV
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mRNA from alignment at H-elongata_contig158068:1057..1376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig158068.3769.1 ID=mRNA_H-elongata_contig158068.3769.1|Name=mRNA_H-elongata_contig158068.3769.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=320bp|location=Sequence derived from alignment at H-elongata_contig158068:1057..1376+ (Himanthalia elongata Himel1 dioecious)
GATTATGCCTTGGTGGCTCGGGTGCGGAAACCGGGACGTGTGCATAAGCT
CGTAAAGACGTGGGCTGGACCATGGCGTGTTGTGCCTAGAGGATCAGAAC
ATGTTCGTGTAGTGGAGGACATTGTCACGGGGGAAACCCAGGAAGTGCAC
GTGGTGCGGATGCGTCTGTATGCTGTTTCGTCTCTGGTTGTGGGGGCAGA
GGTCCGCGAAGTGTTTGAAATGACCAAGCACCAGGGAGAATTTGAGATGG
CTGACGTGATCAGTGTTGGCAAGGATCCGGCGCGAGTAGGAGAATATCGG
GTGCAGATTGCGTGGGTTGG
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Coding sequence (CDS) from alignment at H-elongata_contig158068:1057..1376+

>mRNA_H-elongata_contig158068.3769.1 ID=mRNA_H-elongata_contig158068.3769.1|Name=mRNA_H-elongata_contig158068.3769.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig158068:1057..1376+ (Himanthalia elongata Himel1 dioecious)
GATTATGCCTTGGTGGCTCGGGTGCGGAAACCGGGACGTGTGCATAAGCT
CGTAAAGACGTGGGCTGGACCATGGCGTGTTGTGCCTAGAGGATCAGAAC
ATGTTCGTGTAGTGGAGGACATTGTCACGGGGGAAACCCAGGAAGTGCAC
GTGGTGCGGATGCGTCTGTATGCTGTTTCGTCTCTGGTTGTGGGGGCAGA
GGTCCGCGAAGTGTTTGAAATGACCAAGCACCAGGGAGAATTTGAGATGG
CTGACGTGATCAGTGTTGGCAAGGATCCGGCGCGAGTAGGAGAATATCGG
GTGCAGATTGCGTGGGTTGATTATGCCTTGGTGGCTCGGGTGCGGAAACC
GGGACGTGTGCATAAGCTCGTAAAGACGTGGGCTGGACCATGGCGTGTTG
TGCCTAGAGGATCAGAACATGTTCGTGTAGTGGAGGACATTGTCACGGGG
GAAACCCAGGAAGTGCACGTGGTGCGGATGCGTCTGTATGCTGTTTCGTC
TCTGGTTGTGGGGGCAGAGGTCCGCGAAGTGTTTGAAATGACCAAGCACC
AGGGAGAATTTGAGATGGCTGACGTGATCAGTGTTGGCAAGGATCCGGCG
CGAGTAGGAGAATATCGGGTGCAGATTGCGTGGGTT
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