prot_H-elongata_contig157980.3767.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig157980.3767.1
Unique Name	prot_H-elongata_contig157980.3767.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	112

Homology

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A6H5J939_9PHAE (RRM domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J939_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 7.780e-50
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 0

Query:    3 DDENEKLEGLQQIISDSTS--------PPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            DDE EKLEGLQQIISDST+                   +AK+PDE+SV+VGQVDY+ATPDELQSHFEACGTINRVTILCDKFSG+PKGYAYIEFADKDG+ENALALD+SPFKGR  KV
Sbjct:   77 DDEEEKLEGLQQIISDSTAHAXXXXXXXXXXXXXXXXXAAKSPDESSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGSENALALDNSPFKGRNLKV 194

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7S2AZN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZN6_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.640e-34
Identity = 62/110 (56.36%), Postives = 82/110 (74.55%), Query Frame = 0

Query:    3 DDENEKLEGLQQIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            ++E EKL+ LQ+ ++   +  TAP + A       D TS++VGQVDYEA PDELQ+HF +CGTINRVTILC+ F+G+P+GYAY+EFAD +  ENAL L+ S FKGR+ KV
Sbjct:   30 EEEAEKLKELQESVAKEINSNTAPASAAAVGGSVED-TSIYVGQVDYEAKPDELQAHFASCGTINRVTILCNPFTGKPRGYAYVEFADVEAVENALLLNDSIFKGRELKV 138

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7S3XQ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ96_HETAK)

HSP 1 Score: 123 bits (309), Expect = 3.960e-34
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 0

Query:   38 DETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            DETSV+VGQVDYEA+P+ELQ+HF++CGTINRVTILCDKF+G+PKGYAY+EF +K+  ENAL L  S FKGRQ KV
Sbjct:   37 DETSVYVGQVDYEASPEELQAHFQSCGTINRVTILCDKFTGRPKGYAYVEFLEKESVENALLLHDSLFKGRQLKV 111

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A813N1D3_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813N1D3_ADIRI)

HSP 1 Score: 120 bits (300), Expect = 1.630e-31
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 0

Query:    3 DDENEKLEGLQQIISDSTSPPTAPPAVA---VDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            ++E EKL+ +Q  +      P AP A +   ++     D+ SV+VG VDY AT  EL++HF  CG+I+RVTILCDKFSGQPKG+AY+EFADKD  + ALALD S FKGRQ KV
Sbjct:   57 EEEAEKLKQMQVEVERQIQLPGAPGATSFPTIEEKMEADQKSVYVGNVDYTATAQELENHFHGCGSIHRVTILCDKFSGQPKGFAYVEFADKDSVQTALALDESLFKGRQIKV 169

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7S2V693_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V693_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.140e-31
Identity = 52/75 (69.33%), Postives = 65/75 (86.67%), Query Frame = 0

Query:   38 DETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            ++ S++VGQVDYEATP+ELQ+HF +CGTINRVTILC+KF+ +PKGYAYIEF +K+  ENAL L+ S FKGRQ KV
Sbjct:   19 EDNSIYVGQVDYEATPEELQAHFASCGTINRVTILCNKFTSRPKGYAYIEFLEKESVENALLLNESLFKGRQLKV 93

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A7R9MM94_9ACAR (Hypothetical protein n=2 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9MM94_9ACAR)

HSP 1 Score: 118 bits (295), Expect = 2.450e-31
Identity = 58/115 (50.43%), Postives = 81/115 (70.43%), Query Frame = 0

Query:    3 DDENEKLEGLQQIISD-----STSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            ++E E+L+ +Q++++D     S SP  +   ++++     D  SV+VG VDY AT D+L+ HF  CG++NRVTILCDK++G PKG+AYIEFADKD  E A ALD S FKGRQ +V
Sbjct:   68 EEEAERLKIMQEVMNDEDKHDSDSPNASTTGMSIEEKMEVDARSVYVGNVDYSATADDLERHFHGCGSVNRVTILCDKYTGHPKGFAYIEFADKDSVETATALDESLFKGRQIRV 182

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: R7UZT3_CAPTE (RRM domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UZT3_CAPTE)

HSP 1 Score: 117 bits (292), Expect = 3.380e-31
Identity = 60/115 (52.17%), Postives = 78/115 (67.83%), Query Frame = 0

Query:    3 DDENEKLEGLQ-----QIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            ++E EKL  +Q     Q+I +S+S  +  PA++++     D  S+ +G VDY AT +EL SHF  CG++NR TILCDKFSG PKG+AY+EF DKD  E A ALD S FKGRQ KV
Sbjct:    2 EEEAEKLREMQSEVEKQLILNSSSMGSPTPAISLEDKLDADSRSIWIGNVDYAATAEELGSHFHGCGSVNRATILCDKFSGHPKGFAYVEFVDKDSVETAQALDDSLFKGRQIKV 116

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: UPI0006B0E7E0 (polyadenylate-binding protein 2-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0E7E0)

HSP 1 Score: 118 bits (295), Expect = 4.070e-31
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 0

Query:    3 DDENEKLEGLQQIISD--STSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            ++E EKL+ +Q  +    + SPPT    ++++     D  SV+VG VDY AT +EL+ HF  CG+INRVTILCDKFSG PKG+AY+EFADKD  + A+ALD S F+GRQ KV
Sbjct:   57 EEEAEKLKQMQNEMEKQMNMSPPTGSLGLSLEEKIEVDARSVYVGNVDYGATAEELEQHFHGCGSINRVTILCDKFSGHPKGFAYVEFADKDSVQTAMALDDSLFRGRQIKV 168

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A485KGA4_9STRA (Aste57867_5040 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGA4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.350e-31
Identity = 60/107 (56.07%), Postives = 76/107 (71.03%), Query Frame = 0

Query:    6 NEKLEGLQQIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            N+    +Q  I     PP AP A         DE S+++GQVDYE+TP+ELQ+ F++CGTINRVTILCDKF+GQPKGYAYIEFA+ D  E+AL L+ + F+GRQ KV
Sbjct:   49 NQMHSHVQAQIPKEHLPPAAPTAAQ---QMVIDENSIYIGQVDYESTPEELQALFQSCGTINRVTILCDKFTGQPKGYAYIEFANHDAVESALLLNDTTFRGRQLKV 152

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BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Match: A0A8C1GX60_CYPCA (Poly(A) binding protein nuclear 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1GX60_CYPCA)

HSP 1 Score: 117 bits (292), Expect = 4.360e-31
Identity = 57/113 (50.44%), Postives = 78/113 (69.03%), Query Frame = 0

Query:    3 DDENEKLEGLQQIISDSTS---PPTAPPAVAVDSAKAPDETSVHVGQVDYEATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALALDSSPFKGRQRKV 112
            ++E EKL+ LQ  +    +   PP  P  ++++     D  S++VG VDY AT +EL++HF  CG++NRVTILCDKF+G PKG+AYIEFADK+    A+ALD S F+GRQ KV
Sbjct:    2 EEEAEKLKELQNEVEKQMNLSPPPAGPVIMSIEEKMEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESVRTAMALDESLFRGRQIKV 114

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot

BLAST of mRNA_H-elongata_contig157980.3767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J939_9PHAE	7.780e-50	73.73	RRM domain-containing protein (Fragment) n=2 Tax=E...	[more]
A0A7S2AZN6_9STRA	3.640e-34	56.36	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S3XQ96_HETAK	3.960e-34	74.67	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A813N1D3_ADIRI	1.630e-31	54.87	Hypothetical protein n=2 Tax=Adineta ricciae TaxID...	[more]
A0A7S2V693_9STRA	2.140e-31	69.33	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A7R9MM94_9ACAR	2.450e-31	50.43	Hypothetical protein n=2 Tax=Oppiella nova TaxID=3...	[more]
R7UZT3_CAPTE	3.380e-31	52.17	RRM domain-containing protein n=1 Tax=Capitella te...	[more]
UPI0006B0E7E0	4.070e-31	53.57	polyadenylate-binding protein 2-like n=1 Tax=Limul...	[more]
A0A485KGA4_9STRA	4.350e-31	56.07	Aste57867_5040 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A8C1GX60_CYPCA	4.360e-31	50.44	Poly(A) binding protein nuclear 1 n=1 Tax=Cyprinus...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..110 e-value: 7.3E-16 score: 68.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 43..109 e-value: 2.7E-16 score: 59.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..112 score: 15.801
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 24..112 e-value: 8.9E-23 score: 82.2
None	No IPR available	PANTHER	PTHR23236:SF12	POLYADENYLATE-BINDING PROTEIN 2	coord: 5..112
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 5..112
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 23..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig157980	contig	H-elongata_contig157980:556..1446 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig157980.3767.1	mRNA_H-elongata_contig157980.3767.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig157980 547..1446 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig157980.3767.1 ID=prot_H-elongata_contig157980.3767.1|Name=mRNA_H-elongata_contig157980.3767.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MDDDENEKLEGLQQIISDSTSPPTAPPAVAVDSAKAPDETSVHVGQVDYE
ATPDELQSHFEACGTINRVTILCDKFSGQPKGYAYIEFADKDGAENALAL
DSSPFKGRQRKV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf