prot_H-elongata_contig15789.3762.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig15789.3762.1
Unique Name	prot_H-elongata_contig15789.3762.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	140

Homology

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BLAST of mRNA_H-elongata_contig15789.3762.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.060e-5
Identity = 46/138 (33.33%), Postives = 67/138 (48.55%), Query Frame = 0

Query:   18 LILHQA---QACICTFVVYTLCQK----YDMSDAVMHGTPLSRNVTGD---DATYTLDIITLYKEEENVTYSDEISFNTPASTDDCGVTLSIGKEYLIGLRDSDDD----------GVYTLSSCHGLYEPWSTEIEEE 135
            L+L+QA    AC C     T C+     +  +  V  GT LS++   D   D T+T+ +  +Y  +  V   DEISF T  ++  CGV L+IG+EYL+GL  + DD          G  T+  C  L   WS   ++E
Sbjct:   18 LLLNQAFHASACTCLAQYITPCEYAQGIFTTTTVVFRGTALSKSAQTDINEDVTFTVQVNAVYSGD--VDGQDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCD-LARVWSDVPDDE 152

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig15789.3762.1 vs. uniprot

BLAST of mRNA_H-elongata_contig15789.3762.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LCN7_ECTSI	3.060e-5	33.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001820	Protease inhibitor I35 (TIMP)	PFAM	PF00965	TIMP	coord: 43..129 e-value: 1.8E-7 score: 31.2
None	No IPR available	GENE3D	2.40.50.120		coord: 25..137 e-value: 1.1E-6 score: 30.7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..20
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..25
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 26..139
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 21..25
None	No IPR available	SIGNALP_EUK	SignalP-TM	SignalP-TM	coord: 1..25 score: 0.721
None	No IPR available	TMHMM	TMhelix		coord: 10..32
IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	SUPERFAMILY	50242	TIMP-like	coord: 26..128

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig15789	contig	H-elongata_contig15789:1960..3151 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig15789.3762.1	mRNA_H-elongata_contig15789.3762.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig15789 1920..5252 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig15789.3762.1 ID=prot_H-elongata_contig15789.3762.1|Name=mRNA_H-elongata_contig15789.3762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MAFKKIFLSILAFWWPALILHQAQACICTFVVYTLCQKYDMSDAVMHGTP
LSRNVTGDDATYTLDIITLYKEEENVTYSDEISFNTPASTDDCGVTLSIG
KEYLIGLRDSDDDGVYTLSSCHGLYEPWSTEIEEEVDEC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001820	TIMP
IPR008993	TIMP-like_OB-fold