mRNA_H-elongata_contig15789.3762.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15789.3762.1
Unique NamemRNA_H-elongata_contig15789.3762.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15789.3762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15789contigH-elongata_contig15789:1920..5252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size2251
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15789.3762.1prot_H-elongata_contig15789.3762.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15789 1960..3151 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.9261143-UTR-H-elongata_contig15789:1919..19591622929930.9261143-UTR-H-elongata_contig15789:1919..1959Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15789 1920..1959 +
1691679212.432309-UTR-H-elongata_contig15789:1919..19591691679212.432309-UTR-H-elongata_contig15789:1919..1959Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15789 1920..1959 +
1622929930.9810636-UTR-H-elongata_contig15789:3151..31891622929930.9810636-UTR-H-elongata_contig15789:3151..3189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15789 3152..3189 +
1691679212.4794796-UTR-H-elongata_contig15789:3151..31891691679212.4794796-UTR-H-elongata_contig15789:3151..3189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15789 3152..3189 +
1622929931.0062213-UTR-H-elongata_contig15789:3499..52521622929931.0062213-UTR-H-elongata_contig15789:3499..5252Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15789 3500..5252 +
1691679212.489383-UTR-H-elongata_contig15789:3499..52521691679212.489383-UTR-H-elongata_contig15789:3499..5252Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig15789 3500..5252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.9482281-CDS-H-elongata_contig15789:1959..21171622929930.9482281-CDS-H-elongata_contig15789:1959..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15789 1960..2117 +
1691679212.4472418-CDS-H-elongata_contig15789:1959..21171691679212.4472418-CDS-H-elongata_contig15789:1959..2117Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15789 1960..2117 +
1622929930.9671545-CDS-H-elongata_contig15789:2889..31511622929930.9671545-CDS-H-elongata_contig15789:2889..3151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15789 2890..3151 +
1691679212.4604325-CDS-H-elongata_contig15789:2889..31511691679212.4604325-CDS-H-elongata_contig15789:2889..3151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15789 2890..3151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15789.3762.1

>prot_H-elongata_contig15789.3762.1 ID=prot_H-elongata_contig15789.3762.1|Name=mRNA_H-elongata_contig15789.3762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MAFKKIFLSILAFWWPALILHQAQACICTFVVYTLCQKYDMSDAVMHGTP
LSRNVTGDDATYTLDIITLYKEEENVTYSDEISFNTPASTDDCGVTLSIG
KEYLIGLRDSDDDGVYTLSSCHGLYEPWSTEIEEEVDEC*
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mRNA from alignment at H-elongata_contig15789:1920..5252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15789.3762.1 ID=mRNA_H-elongata_contig15789.3762.1|Name=mRNA_H-elongata_contig15789.3762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3333bp|location=Sequence derived from alignment at H-elongata_contig15789:1920..5252+ (Himanthalia elongata Himel1 dioecious)
GGTCGCAGTTATCAGAAAGGCGCGAATCTGAACCCCCAACATGGCATTCA
AGAAGATTTTCTTGTCAATCTTGGCTTTTTGGTGGCCAGCCCTGATCTTG
CACCAGGCGCAAGCTTGCATCTGCACCTTCGTTGTCTACACTCTGTGTCA
AAAATACGATATGTCAGACGCCGTTATGCATGGTACGCCATTGTCTAGGT
GAGTTAACGGTAACTGCAGCAACAACGCGTTGTTTTTATCGAAAGAATTA
GAGACCGCTGGTCACACGAATATGATTATCTCCGAGCGCTCTAAACGACT
CCTTGGCTCTGTGAGCACGCTCCGTGCAACGAAATATAAGCGGCGCTAGG
ATCGGCAATATACACACAACAATATGGTGGTGAGCTAATTTTCCATCAGT
ATATGATATGGTACGTCGTGTGCCTCGTCGTGTCGGTCGTTGGCTGGTTG
TTGTTGCTGGTACTGGGTTATTGAGGTACGATATGTTATCTCTGGTTTGA
ATTTGGGAGTTGATCTTAAAACAGGCGGCCGCGATCCCGTTTGGGGGAAA
GTTACAAATATCCCCGGCTGAAAAGACATAACACTCTTCTTGGGATATTC
TCACGAAACAATGCACCAGGTGGTATCACTGACCTGAGCTGACGCAGCCC
ATCTCTAGACCCTAACGAGTGATTATGTTCGCGCTTGCAATTTGTCCTGA
GCGCCGGCCTGGATTCTTCGAGAACGCGCTAAACATCCCGGAAAATGACA
GCGTTTTCCACTCCAGAACTCTCTGTCTATCATCACTACTTGCGAATTCG
ACCACTATGATGAGCATAACTTGTCGCACAAGCCTGTTATTATTTTCCTG
TAAGTTTTCGAACTCGCGCATATCTCAAGTTGCGCGCCTGCGTGCTACAG
GTGACCCCCATTTTTAAAGGTTCAGTGTCTACGCTGCTGTTGTGCTTCTG
TATGTTTCTCCCGCGGCCAGAAATGTTACCGGGGACGACGCGACCTACAC
CCTCGACATCATCACGCTCTACAAGGAGGAAGAAAACGTCACGTACTCCG
ATGAGATCAGCTTTAATACCCCTGCTTCTACCGACGACTGTGGCGTGACT
CTTTCAATCGGCAAGGAGTATCTCATCGGTCTCCGCGACTCAGACGACGA
CGGAGTGTACACGTTATCATCTTGCCATGGTTTGTATGAGCCGTGGAGCA
CAGAGATCGAAGAAGAAGTCGACGAGTGCTGAATGAACGACCAAGAGGTT
GAGGCTGCAACAGGTTCGAGGTAAGCGTCATTCGTACACGCGTAAACATG
CGACCACATATATCCCTTGAACAACTGGCTCGGCGAAAGGGTGAAAATAA
CGAAGAAATGAACCCCACGGTTATCGGAGTCAGTATTGCAGTGCTCGGAC
AACATCAACGTCGAGTGATGAAGCTGTATCCTTGTGTTATTCCTTCAAAA
AGCGTTAGATAATAGCTCAACGCGCAAACGCTGGTCTCTTGAAGGCGAAC
GGACGCCCCCGGAATGATTTAAACCTATACCGAGGCGTGATGGCCGTGGC
CATTTTACCGCCGGGATCAAACTGCCGCAGGTGAACGATCGGCAACATTA
AAGGCGCATGATGTACGATCGACCGAATGGCGAAGATGAATGATGTCTGG
GCGGAGAAATGCCTTGGGGGTCGGAGAGGGGAAATAATCAAGGCGGCGAC
CATGTGGCCACCGACGCAGCGTGTGCAACGCTGCACGCGTTTTGTCAAGG
CAGCTGGCGGGCGTTAAAACGTACTTCGATATATATTCTTGCACGACAAA
CGATCGGCTCACCAATGTACCTTCCTTAGTACAAATATATACTGTACGCT
GTTTTTTGCAACCCCCCCAAGGCGTCACGAGAATAGCGAACACGCGAATC
TCCTACAAACTGAGAGACTATTACATCTCGCCGTATATGATGTAAGGATA
TGGTGTGTCTATATATATATATATCTGTACACGTGATAAACGCCAGGGAA
GCTATATCATAAATCGCTGCTGCTGTTGATGGTGTGCGTGTTTGGACGAG
ACAATAGATAGCCAATGTCGCTGCATCCAAAAACTATCTTTCTACAAGAA
AAATAGCTGACCTCGACTGACACGAGAGTAACATGAATGTATGGGAAAGT
TGTAGTGAGGTCCACTGGACGCCAGGGAAGCTAGACATACAGATATTTCT
GCTGCTGGTGACGGGTGGTATGTTCCGTCCGGATGAGATGGAATATGAGG
TAGCCAATAGCATTGCATCCAAATAAGTTTTCTATAGATGCCCCCAACTG
ATACGATACTAAAGAATACACGGCATACGTTGTGCGGGGCTCGGCGAGGC
GATTGTTTCGATTCGGTCGCACATGAGTGACAGGTATTCTCACTCGATAC
GAGAAGCGTTTTCACGACACCGGCCTGGAAAAAGTTAACCCTGATGCCGC
GGAGGCCGATCAGTCGTGTCGAGGTCATATGGATAATCGCCCAAGGACAC
CACCCTTCGGGTGGGGTCAGTACCCTGCTCTTGGATCGATGGAAAGACAG
ATTGAATTCGGCCGATGTTGACCATGAAGAGAAATGCACTTCAAGCACTT
ACGTTCATGCGATCACCTCGGGAGCAAAATGGAGACGCGATAATAATTTT
TGGTAATGTTACGGGGATAGAGTAGTTTCGGTTGATGTAATGTACTATAG
CGGGAGACGTGAGCACTTGCTCTATTAGAATGCTGCGCTCCACTGATGTG
AAACAGATAGCGTCCAAGCGTGACTAAGGCAGGATAGGGTGGTAAGGCTT
AAATATTTGCTGATGATTTGTGTTCAAAGAAGCACACTTAGGTAAGGTTC
AACTGGGCGCTATGTGCATGTGGTAGGAATAAACTTGATTAAGGAGGGTA
TATCATTATTGAGAGCGGGGCAGCAGAAGAAAGAAAAAAATGAAAACAGG
GTAACTTCGAATCTGAGGTTCTGTTTTGAAATTAGTTTCAACGACCTATT
AATTTTCTCGTTGATTGTGCCAAATAGTTTGCTTGCGAAAGTACTTTCGT
TGAATTTGAAAATAGTCATAAGATACTCGGCTAACCATCGCCCGAGATAA
GATGTCGCGTTAAAATACGCCGAGAAAAAACAGCCTGCGCACTGATGAAC
AAAACGCAAGCAGCGCCTTTATGTGTTTGTAAGACGAAGAGTGAAAAGTC
GAACAATTTCGATTTCGATTTTGTATGTCCTCTCGTTTTTAAGCGGTTTT
TCATGTGCCTCAAGTGATGAGTCAGTCATTATCACACCAAAGACACAACC
TTATAATACTTTGTCAACCACGCTCACGCCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig15789:1920..5252+

>mRNA_H-elongata_contig15789.3762.1 ID=mRNA_H-elongata_contig15789.3762.1|Name=mRNA_H-elongata_contig15789.3762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig15789:1920..5252+ (Himanthalia elongata Himel1 dioecious)
ATGGCATTCAAGAAGATTTTCTTGTCAATCTTGGCTTTTTGGTGGCCAGC
CCTGATCTTGCACCAGGCGCAAGCTTGCATCTGCACCTTCGTTGTCTACA
CTCTGTGTCAAAAATACGATATGTCAGACGCCGTTATGCATGGTACGCCA
TTGTCTAGATGGCATTCAAGAAGATTTTCTTGTCAATCTTGGCTTTTTGG
TGGCCAGCCCTGATCTTGCACCAGGCGCAAGCTTGCATCTGCACCTTCGT
TGTCTACACTCTGTGTCAAAAATACGATATGTCAGACGCCGTTATGCATG
GTACGCCATTGTCTAGAAATGTTACCGGGGACGACGCGACCTACACCCTC
GACATCATCACGCTCTACAAGGAGGAAGAAAACGTCACGTACTCCGATGA
GATCAGCTTTAATACCCCTGCTTCTACCGACGACTGTGGCGTGACTCTTT
CAATCGGCAAGGAGTATCTCATCGGTCTCCGCGACTCAGACGACGACGGA
GTGTACACGTTATCATCTTGCCATGGTTTGTATGAGCCGTGGAGCACAGA
GATCGAAGAAGAAGTCGACGAGTGCTGAAAATGTTACCGGGGACGACGCG
ACCTACACCCTCGACATCATCACGCTCTACAAGGAGGAAGAAAACGTCAC
GTACTCCGATGAGATCAGCTTTAATACCCCTGCTTCTACCGACGACTGTG
GCGTGACTCTTTCAATCGGCAAGGAGTATCTCATCGGTCTCCGCGACTCA
GACGACGACGGAGTGTACACGTTATCATCTTGCCATGGTTTGTATGAGCC
GTGGAGCACAGAGATCGAAGAAGAAGTCGACGAGTGCTGA
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