mRNA_H-elongata_contig157889.3761.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157889.3761.1
Unique NamemRNA_H-elongata_contig157889.3761.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157889.3761.1 vs. uniprot
Match: A0A6H5KBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.560e-8
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   40 VEATTCPTLLIHGLRDTVVPHTHSLELYRAS 132
            V  TTCPTL++HGL+D VVPHTHSLELYRAS
Sbjct:  205 VAETTCPTLVLHGLKDQVVPHTHSLELYRAS 235
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BLAST of mRNA_H-elongata_contig157889.3761.1 vs. uniprot
Match: D8LMJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.780e-8
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   40 VEATTCPTLLIHGLRDTVVPHTHSLELYRAS 132
            V  TTCPTL++HGL+D VVPHTHSL+LYRAS
Sbjct:  205 VAETTCPTLVLHGLKDQVVPHTHSLDLYRAS 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157889.3761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBU0_9PHAE1.560e-880.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMJ7_ECTSI2.780e-877.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157889contigH-elongata_contig157889:1119..1253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.883626-CDS-H-elongata_contig157889:1118..12531622929930.883626-CDS-H-elongata_contig157889:1118..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157889 1119..1253 +
1691679212.4143689-CDS-H-elongata_contig157889:1118..12531691679212.4143689-CDS-H-elongata_contig157889:1118..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157889 1119..1253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157889.3761.1prot_H-elongata_contig157889.3761.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157889 1119..1253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157889.3761.1

>prot_H-elongata_contig157889.3761.1 ID=prot_H-elongata_contig157889.3761.1|Name=mRNA_H-elongata_contig157889.3761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
FGAAVRDACGQVEVEATTCPTLLIHGLRDTVVPHTHSLELYRASP
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mRNA from alignment at H-elongata_contig157889:1119..1253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157889.3761.1 ID=mRNA_H-elongata_contig157889.3761.1|Name=mRNA_H-elongata_contig157889.3761.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig157889:1119..1253+ (Himanthalia elongata Himel1 dioecious)
TTTGGGGCTGCTGTGCGCGATGCGTGTGGTCAGGTCGAGGTAGAAGCGAC
GACCTGTCCGACATTGCTGATCCACGGGTTGAGGGACACCGTTGTGCCCC
ATACTCACAGCCTCGAGCTCTACCGCGCGAGTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig157889:1119..1253+

>mRNA_H-elongata_contig157889.3761.1 ID=mRNA_H-elongata_contig157889.3761.1|Name=mRNA_H-elongata_contig157889.3761.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig157889:1119..1253+ (Himanthalia elongata Himel1 dioecious)
TTTGGGGCTGCTGTGCGCGATGCGTGTGGTCAGGTCGAGGTAGAAGCGAC
GACCTGTCCGACATTGCTGATCCACGGGTTGAGGGACACCGTTGTGCCCC
ATACTCACAGCCTCGAGCTCTACCGCGCGAGTCCCTTTGGGGCTGCTGTG
CGCGATGCGTGTGGTCAGGTCGAGGTAGAAGCGACGACCTGTCCGACATT
GCTGATCCACGGGTTGAGGGACACCGTTGTGCCCCATACTCACAGCCTCG
AGCTCTACCGCGCGAGTCCC
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