mRNA_H-elongata_contig15786.3759.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: D7G6Z3_ECTSI (DNA ligase IV n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z3_ECTSI) HSP 1 Score: 325 bits (834), Expect = 6.070e-101 Identity = 162/249 (65.06%), Postives = 195/249 (78.31%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGP--EGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAGDEAKREEQLSAFFELNAIQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGVAVPTADGSPPTKFFPITRVGTGFTLEELEALNKRLEGKWKTFDT 741
+VV+WDD TGSMVPFG NR AKEE EG G GTRWLFYVVFD++YA G G E M +I+R+A S APCPP ++ GNLTALPLDVRR+VLRS++ E +HRLEFVKS +VSAGDE +R++QL FE AI L EEGLVVK L GHY IGDKS+K LW+KMKPEYSDQT D+DL+IL AGFA+G+MRSGLLSKFLVGVAVP D P +++P+ RVGTG+++ ELE LN+ L+ KWK+FDT
Sbjct: 340 EVVTWDDNTGSMVPFGSNRTYAKEELEGRGGGTRWLFYVVFDVLYAEGSGGGLEDGGTMEEIVREAVRNSIAPCPPPTEVQAGNLTALPLDVRRKVLRSIVTENEHRLEFVKSWEVSAGDEVERKKQLDECFEQRAIHLNEEGLVVKDLHGHYMIGDKSKKIPLWIKMKPEYSDQTEDMDLLILAAGFANGKMRSGLLSKFLVGVAVPNEDRQPRKEYYPLARVGTGYSINELEDLNELLKDKWKSFDT 588
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A6H5KP03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP03_9PHAE) HSP 1 Score: 293 bits (751), Expect = 2.420e-91 Identity = 150/238 (63.03%), Postives = 179/238 (75.21%), Query Frame = 1
Query: 34 MVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGP--EGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAGDEAKREEQLSAFFELNAIQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGVAVPTADGSPPTKFFPITRVGTGFTLEELEALNKRLEGKWKTFDT 741
MVPFG NR AKEE EG G GTRWLFYVVFD++YA G G E M +I+RDA S APCPP ++ GNLTALPLDVRR VLRS++ E +HRLEFVKS +V AGDE +R++QL FE AI L EEGLVVK L GHY + T LW+KMKPEYSDQT D+DL+IL AGFA+G+MRSG+LSKFLVGVAVP DG P +F+P+ RVGTG+++ ELE LN+ L+ KWK+FDT
Sbjct: 1 MVPFGSNRTYAKEELEGRGGGTRWLFYVVFDVLYAEGSGGGLEDGGTMDEIVRDAVKSSIAPCPPRSEVQAGNLTALPLDVRRTVLRSIVTENEHRLEFVKSWEVPAGDEVERKKQLDECFEQRAIHLNEEGLVVKDLHGHYMVN-----TPLWIKMKPEYSDQTEDMDLLILAAGFANGKMRSGMLSKFLVGVAVPNEDGQPRKEFYPLARVGTGYSINELEDLNELLKDKWKSFDT 233
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A7S3XL94_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL94_HETAK) HSP 1 Score: 175 bits (444), Expect = 9.160e-47 Identity = 110/261 (42.15%), Postives = 152/261 (58.24%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLM-EKKHRLEFVKSRDVSA--GDEAKREEQLSAF----------FELNAIQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGVAVPTADGSP--PTKFFPITRVGTGFTLEELEALNKRLEGKWKTFD 738
++ WD+E G M PF N+ A++E R LFY++FD++Y AGEG A E P + L+ G+LTA PL +RRR LR++L E HRLE +V A G E + Q +A + A++ EEGLVVK L+ Y G+ S+KT W+KMKPEYSDQT +LDL++LGA ++ GR R+GLLS FL+G+A + G PTKFF +VGTG++L+ELE LN +LE + TF+
Sbjct: 37 EIAVWDNELGEMAPFRSNKTVAQKEDH------RQLFYILFDVLYLAGEG--------------AAEVLGP----LGLRAGSLTAAPLRLRRRALRALLRKETPHRLELCHGLEVPALIGLEKNKNAQATATSQERRDKLLDYYTKAVEGKEEGLVVKDLESRYVTGNSSKKTNHWIKMKPEYSDQTTNLDLVVLGAYYSEGRRRAGLLSHFLLGLADGRSAGGDGRPTKFFTFGKVGTGYSLKELEDLNAKLEDHFVTFN 273
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A7S3H4G1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4G1_9STRA) HSP 1 Score: 130 bits (326), Expect = 2.230e-33 Identity = 81/207 (39.13%), Postives = 117/207 (56.52%), Query Frame = 1
Query: 103 WLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAGDEAKREEQLSAFFELNAIQL-GEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGR-MRSGLLSKFLVGVAVPTADGSPPTKFFPITRVGTGFTLEELEALNKRLE 717
W ++ FDI+Y +GP + + L D G + G +T LPL VRR +L V+ +R+ V +R V++ D + R EQ+ ++F N I L GEEGLV+K L+G YE+G+KSR T LWVKMKPEY D DLDL++LGA G+ +R +S F+ GV D P + + +VGTG++ EEL L ++
Sbjct: 7 WTMFIAFDILYL--DGPNSQSIIQAALHDCN-------IYGRYVPSGEITNLPLIVRRNILTRVIHPIPNRVCIVPNRIVTSTDTSVRREQIESYF--NEITLSGEEGLVIKNLNGLYELGEKSRSTALWVKMKPEYGDSMQDLDLLVLGAYHGEGKGLRGRGISTFVCGVK----DDKNPNVYHTVCKVGTGYSFEELLNLRNLIK 198
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A482S4A1_9ARCH (DNA_LIGASE_A3 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4A1_9ARCH) HSP 1 Score: 132 bits (333), Expect = 6.830e-33 Identity = 92/257 (35.80%), Postives = 141/257 (54.86%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTR-----------WLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAGDEAKREEQLSAFFELNAIQLGEEGLVVKTLDGHYEIGDKSRK--TC----LWVKMKPEYSDQTADLDLIILGAGFAHG-RMRSGLLSKFLVGVAVPTADGSPPTKFFPITRVGTGFTLEELEALNKRLE 717
++ + + + +++PFG N + A+ E E G+ + W+ +V FD+V+ GE Q D + G A P + G +T LPL VRRR+L S++ ++HR+E VK + +++ + R ++L+ FE I G+EGLVVK+L Y +G+ SR TC +W KMKPEY D DLDLII+G + G R R G+ SKFL GV ADG T + + +VGTG+ + EL L ++L+
Sbjct: 69 EICALEGQAKTILPFGSNMSVARLERE-YGANKQDQLGWHTDLPNWMCFVAFDLVFLQGE---DAQPAVDRVMGECGIDTAHVPSNV---HGEITHLPLIVRRRLLESLMEVREHRVEMVKHKYITSDNVEARRKELAEHFEKVVID-GQEGLVVKSLSSPYILGETSRSASTCKEGVVWCKMKPEYGDYIEDLDLIIIGGYYGEGARSREGV-SKFLCGVIEHRADGQ--TVYHSLAKVGTGYNMVELTELREKLK 314
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: T0Q6R2_SAPDV (DNA ligase 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q6R2_SAPDV) HSP 1 Score: 127 bits (318), Expect = 1.250e-29 Identity = 84/250 (33.60%), Postives = 130/250 (52.00%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAGDEAK-REEQLSAFFELNAIQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGVAVPT---ADGSPPTKFFPITRVGTGFTLEELEALNKRLEGKWKTFD 738
+++ WD FG + A E+A+G G +WL YVV+DIVY G+G +++ A P + N+ LPL R VL +VL HR+E ++ V A A+ R E++ A + + G EG+++K HY G+ RK+ WVK+KP+Y+ T LD++++G + G R G +S FL+GV T D S P F +VG+G++L ELEAL +RL W+ ++
Sbjct: 310 EMLVWDSVAFKYESFGSLKTVAIEQAQGKNPG-QWLCYVVWDIVYCGGDGAAA------LIQKAC--------PNVASTSTNIMGLPLSARLSVLDAVLTPLTHRVERIEQVLVPASMPAQARHERVMAEVDARLLA-GYEGVILKDATSHYMCGEVGRKSQRWVKLKPDYAGMTRQLDVLVIGGYYGSGSRRGGAVSHFLLGVLERTPKDTDASLPVVSF--CKVGSGYSLPELEALRERLAPHWRPWE 541
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A1V9YY38_9STRA (DNA ligase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YY38_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.690e-28 Identity = 82/250 (32.80%), Postives = 130/250 (52.00%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAG-DEAKREEQLSAFFELNAIQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGV---AVPTADGSPPTKFFPITRVGTGFTLEELEALNKRLEGKWKTFD 738
+++ WD FG + A E+ +G +WL YVV+DIVY G G+ +LR P ++ + N+ LPL R +VL VL+ HR+E ++ VSA +R E++ + + G EGL++K HY G+ SRK+ W+K+KP+Y+ T LD++++G + G R G +S FL+GV A D + P F +VGTG+T+EEL+ L + L W+++D
Sbjct: 312 EMLVWDSLEFKFQSFGSLKTVAVEQVQGKNP-HQWLCYVVWDIVYLHG----GDTPA--LLRKIC--------PNVLAETANVMGLPLSHRLKVLDHVLISLAHRVERIEQTLVSATLSPQERHERVMTAVDAR-LMAGYEGLILKDATSHYMCGESSRKSQRWIKLKPDYAGMTRQLDVLVIGGYYGSGARRGGAVSHFLLGVLERAPSEEDATIPVVSF--CKVGTGYTIEELDTLRQHLAPHWQSWD 543
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A1W0A5Q0_9STRA (DNA ligase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A5Q0_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.690e-28 Identity = 77/248 (31.05%), Postives = 126/248 (50.81%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAG-DEAKREEQLSAFFELNAIQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGVAV-PTADGSPPTKFFPITRVGTGFTLEELEALNKRLEGKWKTFD 738
+++ WD + FG ++ A E+ +G +WL YVV+DIVY G+ +A A P I + N+ LPL R ++L +VL HR+ ++ V A +R E++ A + + G EGL++K HY G+ RK+ W+K+KP+Y+ T LD+I++G + G R G +S FL+GV P ++ +VGTG+++EEL+AL K L W+ ++
Sbjct: 312 EMLVWDSVEFKFLSFGSLKSVASEQVQGKND-HKWLCYVVWDIVYLGGK--------------SASTLLAKLCPTIKTETTNIMGLPLTSRLKILSAVLTPLDHRVMRIEQTLVPASLSPVERHERVMADID-KRLSAGYEGLILKDATSHYMCGEVGRKSQRWIKLKPDYAGMTRQLDVIVIGGYYGSGSRRGGAVSHFLLGVLERPLSENDFSVPVVSFCKVGTGYSMEELDALRKHLAPHWQPWE 543
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A485KJH4_9STRA (DNA ligase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJH4_9STRA) HSP 1 Score: 121 bits (304), Expect = 9.170e-28 Identity = 82/250 (32.80%), Postives = 125/250 (50.00%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAGDEAKREEQLSAFFELNA-IQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGVAV-PTADGSPPTKFFPIT--RVGTGFTLEELEALNKRLEGKWKTFD 738
+++ WD PFG + A E+ +G+ RWL YVV+D+V G DAA A CP G+ N+ LPL R +L +L HR+ + V + A+ +L +++A + G EGL++K HY G+ RKT W+K+KP+Y T LD+++LG + G+ R G +S FL+GV P A P ++ +VGTG+TLEEL+AL L W+ ++
Sbjct: 307 EMLVWDSLEFRYYPFGALKTVASEQLQGINP-HRWLCYVVWDVVSLGGP-------------DAAKLILAACP-GLTNPDCNIMGLPLSSRVHILDHILTSVPHRVTKIDQTLVPSTLTAQERHEL-VMADIDARLTAGFEGLILKDATSHYVCGEVGRKTQKWIKLKPDYEGMTQHLDVLVLGGYYGAGQRRGGAVSHFLLGVLQHPIAPNDVPKNIPMVSFCKVGTGYTLEELDALRTHLAPHWRPWE 540
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Match: A0A6G0WNK5_9STRA (DNA ligase n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNK5_9STRA) HSP 1 Score: 117 bits (294), Expect = 2.000e-26 Identity = 79/252 (31.35%), Postives = 125/252 (49.60%), Query Frame = 1
Query: 1 KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGPEGEQRMTDILRDAAGESCAPCPPGIVLKGGNLTALPLDVRRRVLRSVLMEKKHRLEFVKSRDVSAGDEAKREEQLSAFFELNAIQLGEEGLVVKTLDGHYEIGDKSRKTCLWVKMKPEYSDQTADLDLIILGAGFAHGRMRSGLLSKFLVGVAV----PTA--DGSPPTKFFPITRVGTGFTLEELEALNKRLEGKWKTFD 738
+++ WD PFG + A E+ +G+ RW+ YVV+D+VY G P + ++D +C PG+ N+ LPL R +L + +R+ ++ V A + +L + G EGL++K HY G+ SRK+ W+K+KP+Y T LD+I+LG + G+ R G +S FL+GV PT+ D P F +VGTG++LEEL+AL L W+ ++
Sbjct: 312 EMLVWDSIEFRYYPFGSLKTVASEQPQGINP-HRWMCYVVWDVVYLGG--PAASKLISD--------TC----PGV--STSNIMGLPLSSRLGLLDRIFTSSPNRVMKIEQTLVPANLSDQERHELVMTNVDARLSAGYEGLILKDATSHYMCGEVSRKSQKWIKLKPDYEGMTQHLDVIVLGGYYGEGKRRGGAVSHFLLGVLQHSISPTSLPDNIPVISF---CKVGTGYSLEELDALRTHLAPHWRPWE 543 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15786.3759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15786.3759.1 >prot_H-elongata_contig15786.3759.1 ID=prot_H-elongata_contig15786.3759.1|Name=mRNA_H-elongata_contig15786.3759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp KVVSWDDETGSMVPFGHNRACAKEEAEGVGSGTRWLFYVVFDIVYAAGEGback to top mRNA from alignment at H-elongata_contig15786:390..2853- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15786.3759.1 ID=mRNA_H-elongata_contig15786.3759.1|Name=mRNA_H-elongata_contig15786.3759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2464bp|location=Sequence derived from alignment at H-elongata_contig15786:390..2853- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15786:390..2853- >mRNA_H-elongata_contig15786.3759.1 ID=mRNA_H-elongata_contig15786.3759.1|Name=mRNA_H-elongata_contig15786.3759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig15786:390..2853- (Himanthalia elongata Himel1 dioecious)back to top |