mRNA_H-elongata_contig157816.3756.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 149 bits (377), Expect = 3.690e-39 Identity = 77/185 (41.62%), Postives = 118/185 (63.78%), Query Frame = 1
Query: 7 SELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGYGLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
+ L + F K GE + GCA ERD E GTL I+Q + ++++ ++ + + +IPASPG+D+GP+ + E+GG + R +GS+M +S +RPDI+ A+ A ARH+H P RHWKA+++I A + T+++G+ + RG GL L+ + DA Y A + DRRSVSG+A + IS S TQ V
Sbjct: 214 ASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPV---REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIV 394
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE) HSP 1 Score: 142 bits (357), Expect = 8.180e-38 Identity = 74/185 (40.00%), Postives = 114/185 (61.62%), Query Frame = 1
Query: 7 SELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGYGLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
+ L ++F K+ GE + + GCA ER E GTL I+Q + ++M+ ++ + IPASPG+DLGP+ + E GG + R +GS+M +S +RPD++ A+ A A H+H P RHW A+ +I + T+++G+ + RG GL L+ + DA Y A ++DRRSVSG+A + IS S TQ V
Sbjct: 132 ASLNKKFPTKNLGECEWFDGCAIERGVEAGTLRISQTAYIDSMVKRFEAQSTSLIPASPGVDLGPKRDDENGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASY-ANTDDRRSVSGLATTVGGTVISHGSKTQSIV 312
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 146 bits (368), Expect = 2.930e-37 Identity = 74/185 (40.00%), Postives = 115/185 (62.16%), Query Frame = 1
Query: 7 SELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGYGLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
+ L ++F K+ E + + GCA ERD E GTL I+Q + ++M+ ++ + + IPASPG+DLGP+ + E GG + R +GS+M +S +RPD++ A+ A ARH+H P RHW A+ +I + T+++G+ + RG GL L+ + DA Y A + DRRSVSG+A + +S S TQ V
Sbjct: 505 ASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPV---REAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIV 685
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5KYI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI5_9PHAE) HSP 1 Score: 145 bits (365), Expect = 8.960e-37 Identity = 75/185 (40.54%), Postives = 115/185 (62.16%), Query Frame = 1
Query: 7 SELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGYGLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
+ L ++F K+ GE + + GCA ERD E GTL I+Q + ++M+ ++ + IPASPG+DLGP+ + E GG + R +GS+M +S +RPD++ A+ A ARH+H P RHW A+ +I + T+++G+ + RG GL L+ + DA Y A + DRRSVSG+A + +S S TQ V
Sbjct: 908 ASLNKKFPPKYLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLIRFDEQSTSRIPASPGVDLGPKRDDEKGGEWSV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILFYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVSHGSKTQSIV 1088
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.140e-36 Identity = 81/191 (42.41%), Postives = 114/191 (59.69%), Query Frame = 1
Query: 1 FFSELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGD--YRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGY--GLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
F +L VK+ G+L+ Y+GC +ERDW+ GTL+I+Q T+AE + ++G+ IP G+ L E ++E+ +R L+GSLM ++ TRPDIANA+ A AR+ +P HW+A L I V T ++G+ F RG GL + F DADY + + DRRSVSG V+ ISW S TQKCV
Sbjct: 139 FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLS-----EFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCV 324
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5L0Z9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z9_9PHAE) HSP 1 Score: 139 bits (349), Expect = 8.210e-36 Identity = 82/191 (42.93%), Postives = 114/191 (59.69%), Query Frame = 1
Query: 1 FFSELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGD--YRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGY--GLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
F +L VK+ G+L+ Y+GC +ERDW+ GTL+I+Q T+AE + ++G+ IP G+ L E ++E+ +R L+GSLM ++ TRPDIANA+ A AR+ +P H +A L I V T E+G+ F RG GL + FADADY + + DRRSVSG V+ ISW S TQKCV
Sbjct: 80 FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLS-----EFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHCRAGLGILGYVVRTSELGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCV 265
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 141 bits (355), Expect = 8.420e-36 Identity = 81/191 (42.41%), Postives = 114/191 (59.69%), Query Frame = 1
Query: 1 FFSELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGD--YRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGY--GLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
F +L VK+ G+L+ Y+GC +ERDW+ GTL+I+Q T+AE + ++G+ IP G+ L E ++E+ +R L+GSLM ++ TRPDIANA+ A AR+ +P HW+A L I V T ++G+ F RG GL + F DADY + + DRRSVSG V+ ISW S TQKCV
Sbjct: 313 FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLS-----EFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCV 498
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5KYH9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH9_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.030e-35 Identity = 73/185 (39.46%), Postives = 113/185 (61.08%), Query Frame = 1
Query: 7 SELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGYGLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
+ L + F K+ GE + + GCA ERD GTL I+Q + ++M+ ++ + + IPASPG+DLGP+ + E GG + R +GS+M +S +RPD++ A+ A ARH+H P RHW A+ +I + T+++G+ + RG GL L+ + DA Y A + DRRSVS +A + +S S TQ V
Sbjct: 664 ASLNKEFPTKNLGECEWFDGCAIERDVAAGTLTISQTAYVDSMVKRFDVQSASRIPASPGVDLGPKRDDEKGGEWPV---REAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILRYLKGTRDLGITYQRGSGLGLAVYVDASY-ADTEDRRSVSRLAATVGGTVVSHGSKTQSIV 844
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 141 bits (355), Expect = 1.980e-35 Identity = 81/191 (42.41%), Postives = 114/191 (59.69%), Query Frame = 1
Query: 1 FFSELKERFSVKHQGELKMYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGD--YRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGY--GLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
F +L VK+ G+L+ Y+GC +ERDW+ GTL+I+Q T+AE + ++G+ IP G+ L E ++E+ +R L+GSLM ++ TRPDIANA+ A AR+ +P HW+A L I V T ++G+ F RG GL + F DADY + + DRRSVSG V+ ISW S TQKCV
Sbjct: 834 FGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLS-----EFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCV 1019
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE) HSP 1 Score: 139 bits (351), Expect = 7.140e-35 Identity = 77/186 (41.40%), Postives = 116/186 (62.37%), Query Frame = 1
Query: 7 SELKERFSVKHQGELKMYTGCAFERDWENG-TLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRVEGETGGNDELGDYRALVGSLMRMSVMTRPDIANAL*ACARHSHNPTARHWKALLRIAADVNATKEIGLRFVRGYGLRLSAFADADYTAASNDRRSVSGVAVLLSDKAISWKSSTQKCV 561
+ L + F K GE + GCA ERD E G TL I+Q + + ++ ++ + + +IPASPG+D+GP+ + E+GG + R +GS+M +S +RPDI+ A+ A ARH+H P RHWKA+++I A + T+++G+ + RG GL L + DA Y A + DRRSVSG+A + IS S TQ V
Sbjct: 1603 ASLNKAFPTKDLGECVWFDGCAVERDLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPV---REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLEVYVDASY-ADAEDRRSVSGLATTVGGTVISHGSKTQAIV 1783 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157816.3756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig157816.3756.1 >prot_H-elongata_contig157816.3756.1 ID=prot_H-elongata_contig157816.3756.1|Name=mRNA_H-elongata_contig157816.3756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp MYTGCAFERDWENGTLEINQNTFAENMITQYGITAVFNIPASPGMDLGPRback to top mRNA from alignment at H-elongata_contig157816:522..1082+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig157816.3756.1 ID=mRNA_H-elongata_contig157816.3756.1|Name=mRNA_H-elongata_contig157816.3756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at H-elongata_contig157816:522..1082+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig157816:522..1082+ >mRNA_H-elongata_contig157816.3756.1 ID=mRNA_H-elongata_contig157816.3756.1|Name=mRNA_H-elongata_contig157816.3756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig157816:522..1082+ (Himanthalia elongata Himel1 dioecious)back to top |