mRNA_H-elongata_contig157786.3753.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157786.3753.1
Unique NamemRNA_H-elongata_contig157786.3753.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A6H5L470_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L470_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.010e-37
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQV 249
            KVQEAACSA+SVMEEEVGY LQ+YLD IV+CFAAAL KYQTRSLIVLYDT+GTLAD+ G CLAQ  L+TVLMPPLMQRWNQV
Sbjct:  498 KVQEAACSALSVMEEEVGYRLQVYLDPIVRCFAAALAKYQTRSLIVLYDTIGTLADNAGNCLAQPALMTVLMPPLMQRWNQV 579
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A1Y3EX98_9BILA (HEAT repeat protein (Fragment) n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EX98_9BILA)

HSP 1 Score: 96.7 bits (239), Expect = 5.110e-22
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQ 246
            +VQEAACSA + +EEE  + L  YL+ +VQ   AA  KYQ ++L++LYD VGTLA+S G CLA+  L+  LMPPLM +WN+
Sbjct:  216 RVQEAACSAFATLEEEANFELVPYLNEVVQTLCAAFEKYQAKNLLILYDAVGTLAESIGTCLAKPELVDALMPPLMAKWNR 296
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: UPI0001EFE231 (putative HEAT protein n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFE231)

HSP 1 Score: 96.7 bits (239), Expect = 1.620e-21
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQ 246
            +VQEAACSA + +EEE  + L  YL+ +VQ   AA  KYQ ++L++LYD VGTLA+S G CLA+  L+  LMPPLM +WN+
Sbjct:  573 RVQEAACSAFATLEEEANFELVPYLNEVVQTLCAAFEKYQAKNLLILYDAVGTLAESIGTCLAKPELVDALMPPLMAKWNR 653
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A4Q0A0B3_9FUNG (Armadillo-type protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4Q0A0B3_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 5.670e-21
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQV 249
            +VQEAACSA + +EEE G  L  YLD I+QC   A  KYQ ++L++LYD VGTLADS G  L +   + +LMPPL+ +W+Q+
Sbjct:  503 RVQEAACSAFATIEEEAGAELAPYLDPIIQCLVQAFTKYQKKNLLILYDAVGTLADSVGEALNRPEYIQMLMPPLINKWHQL 584
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A8K0JM43_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JM43_9TREE)

HSP 1 Score: 95.1 bits (235), Expect = 5.680e-21
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRW 240
            +VQEA CSA + +EEE G  L+ Y+  I+Q   AA  KYQ R+L++LYD +GTLADS GP L+++  L VL+PPLMQ+W
Sbjct:  516 RVQEAGCSAFATLEEEAGTALEPYMQPILQSLVAAFHKYQQRNLLILYDAIGTLADSVGPALSKEEHLQVLIPPLMQKW 594
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A0V1BSF2_TRISP (Transportin-1 n=15 Tax=Trichinella TaxID=6333 RepID=A0A0V1BSF2_TRISP)

HSP 1 Score: 95.1 bits (235), Expect = 5.680e-21
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQ 246
            +VQ+AACSA + +EEE  + L  YL+ +VQ   AA  KYQ ++L++LYD VGTLA+S G CLA+  L+  LMPPLM +WN+
Sbjct:  527 RVQKAACSAFATLEEEANFELVPYLNEVVQTLCAAFEKYQAKNLLILYDAVGTLAESIGTCLAKPELVDALMPPLMAKWNR 607
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: M5BX71_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 12774 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BX71_THACB)

HSP 1 Score: 89.7 bits (221), Expect = 4.950e-20
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQV 249
            +VQEA CSA + +EE+ G  L+ YLD I++    A  KYQ ++L++LYD +GTLAD+ G  L +K +L VLMPPL++RW ++
Sbjct:  101 RVQEAGCSAFATLEEDAGPALEPYLDPILRNLVFAFQKYQAKNLLILYDAIGTLADAVGSSLNRKEVLDVLMPPLVERWGRL 182
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A7S0DC63_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DC63_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 9.290e-20
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQV 249
            +VQEAACSA + +EEE    L  YL+ I++    AL +YQ ++L+VLYD +GTLA+S GP L +K LL +LMPPLM +W Q+
Sbjct:  478 RVQEAACSAFATLEEEAQERLIPYLEPILKNLMFALQRYQAKNLLVLYDAIGTLAESVGPALGRKELLKILMPPLMSKWQQL 559
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A077X3W6_9FUNG (Importin N-terminal domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077X3W6_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 1.740e-19
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQV 249
            +VQEAACS+ S++EE V   L  YL  I+   A A  KYQ R+L++LYDTVGTLAD  GP + Q+  + ++MPPL+Q+W Q+
Sbjct:  506 RVQEAACSSFSLLEENVTTDLIPYLHPILMTLATAFEKYQHRNLLLLYDTVGTLADVVGPAINQEEFIRIIMPPLIQKWQQI 587
[Close]
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Match: A0A8H7LU19_9AGAM (ARM repeat-containing protein (Fragment) n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7LU19_9AGAM)

HSP 1 Score: 90.1 bits (222), Expect = 2.870e-19
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    4 KVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYDTVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQV 249
            +VQEA CSA + +EE+ G  L+ YLD I++    A  KYQ ++L++LYD +GTLAD+ G  L +K +L VLMPPL++RW ++
Sbjct:   86 RVQEAGCSAFATLEEDAGPALEPYLDPILRNLVFAFQKYQAKNLLILYDAIGTLADAVGSALNRKEVLDVLMPPLVERWGRL 167
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157786.3753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L470_9PHAE2.010e-3784.15Importin N-terminal domain-containing protein n=2 ... [more]
A0A1Y3EX98_9BILA5.110e-2254.32HEAT repeat protein (Fragment) n=1 Tax=Trichinella... [more]
UPI0001EFE2311.620e-2154.32putative HEAT protein n=1 Tax=Trichinella spiralis... [more]
A0A4Q0A0B3_9FUNG5.670e-2152.44Armadillo-type protein n=1 Tax=Dimargaris cristall... [more]
A0A8K0JM43_9TREE5.680e-2154.43Uncharacterized protein n=1 Tax=Filobasidium flori... [more]
A0A0V1BSF2_TRISP5.680e-2153.09Transportin-1 n=15 Tax=Trichinella TaxID=6333 RepI... [more]
M5BX71_THACB4.950e-2048.78Rhizoctonia solani AG1-IB WGS project CAOJ00000000... [more]
A0A7S0DC63_9EUKA9.290e-2052.44Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A077X3W6_9FUNG1.740e-1951.22Importin N-terminal domain-containing protein n=1 ... [more]
A0A8H7LU19_9AGAM2.870e-1948.78ARM repeat-containing protein (Fragment) n=1 Tax=R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157786contigH-elongata_contig157786:486..734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.2e-32
Seed eggNOG ortholog2880.D8LLU7
Preferred nameTNPO1
KEGG koko:K10265,ko:K18727,ko:K18752
KEGG TC1.I.1
GOsGO:0000060,GO:0000166,GO:0000278,GO:0000280,GO:0001882,GO:0001883,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007275,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009791,GO:0009892,GO:0009894,GO:0009987,GO:0010458,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030031,GO:0030097,GO:0030427,GO:0030705,GO:0031047,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035166,GO:0035167,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0035735,GO:0036094,GO:0040029,GO:0042073,GO:0042277,GO:0042306,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0045184,GO:0045595,GO:0045596,GO:0046822,GO:0046907,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051093,GO:0051147,GO:0051148,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051223,GO:0051233,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060271,GO:0060341,GO:0061013,GO:0061608,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070727,GO:0070922,GO:0070925,GO:0071702,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072686,GO:0080090,GO:0090087,GO:0097159,GO:0097367,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0140014,GO:0140104,GO:0140142,GO:1900180,GO:1901265,GO:1901363,GO:1903047,GO:1903311,GO:1903827,GO:1904589,GO:1990023
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2023@1,KOG2023@2759
Ec32 ortholog descriptiontransportin 1 isoform 2
Ec32 orthologEc-10_003170.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.230039-CDS-H-elongata_contig157786:485..7341622929930.230039-CDS-H-elongata_contig157786:485..734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157786 486..734 -
1691679212.1970844-CDS-H-elongata_contig157786:485..7341691679212.1970844-CDS-H-elongata_contig157786:485..734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157786 486..734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157786.3753.1prot_H-elongata_contig157786.3753.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157786 486..734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157786.3753.1

>prot_H-elongata_contig157786.3753.1 ID=prot_H-elongata_contig157786.3753.1|Name=mRNA_H-elongata_contig157786.3753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
MKVQEAACSAMSVMEEEVGYGLQLYLDAIVQCFAAALIKYQTRSLIVLYD
TVGTLADSTGPCLAQKNLLTVLMPPLMQRWNQV
back to top

mRNA from alignment at H-elongata_contig157786:486..734-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157786.3753.1 ID=mRNA_H-elongata_contig157786.3753.1|Name=mRNA_H-elongata_contig157786.3753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig157786:486..734- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGCAAGAGGCGGCGTGCTCGGCCATGTCCGTCATGGAAGAGGA
GGTGGGGTACGGCCTCCAGCTTTACCTCGACGCTATCGTCCAATGCTTCG
CTGCGGCGCTCATCAAGTACCAGACCCGAAGCCTCATTGTCCTGTACGAC
ACCGTGGGAACTCTCGCCGATAGCACGGGGCCGTGCCTCGCCCAGAAGAA
CCTTCTGACCGTGCTGATGCCACCCCTCATGCAGAGATGGAATCAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig157786:486..734-

>mRNA_H-elongata_contig157786.3753.1 ID=mRNA_H-elongata_contig157786.3753.1|Name=mRNA_H-elongata_contig157786.3753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig157786:486..734- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTGCAAGAGGCGGCGTGCTCGGCCATGTCCGTCATGGAAGAGGA
GGTGGGGTACGGCCTCCAGCTTTACCTCGACGCTATCGTCCAATGCTTCG
CTGCGGCGCTCATCAAGTACCAGACCCGAAGCCTCATTGTCCTGTACGAC
ACCGTGGGAACTCTCGCCGATAGCACGGGGCCGTGCCTCGCCCAGAAGAA
CCTTCTGACCGTGCTGATGCCACCCCTCATGCAGAGATGGAATCAGGTGA
TGAAGGTGCAAGAGGCGGCGTGCTCGGCCATGTCCGTCATGGAAGAGGAG
GTGGGGTACGGCCTCCAGCTTTACCTCGACGCTATCGTCCAATGCTTCGC
TGCGGCGCTCATCAAGTACCAGACCCGAAGCCTCATTGTCCTGTACGACA
CCGTGGGAACTCTCGCCGATAGCACGGGGCCGTGCCTCGCCCAGAAGAAC
CTTCTGACCGTGCTGATGCCACCCCTCATGCAGAGATGGAATCAGGTG
back to top