mRNA_H-elongata_contig157749.3750.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157749.3750.1
Unique NamemRNA_H-elongata_contig157749.3750.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 5.210e-25
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            RGDSGLLLMA EQSRVLSYYVP LGPAPRW SFLD LTEELEEE +ASV+EDYKFVT AEV
Sbjct:  348 RGDSGLLLMATEQSRVLSYYVPALGPAPRWCSFLDVLTEELEEEQEASVYEDYKFVTTAEV 408
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.110e-20
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            RGDSGLL++A EQ+RV++YY+P LGPAPRW SFLD LTEELEE   A+V++DYKFVT  EV
Sbjct:  351 RGDSGLLMLAGEQARVMAYYIPTLGPAPRWCSFLDSLTEELEEGDAATVYDDYKFVTRDEV 411
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: H3GLA6_PHYRM (NUC153 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLA6_PHYRM)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-19
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            +G SG+LL+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE QA+V++DY+FVT AE+
Sbjct:  329 QGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 389
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: A0A3M6VIN9_9STRA (NUC153 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-19
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            +G SG+LL+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE QA+V++DY+FVT AE+
Sbjct:  330 QGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 390
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: G4YXE2_PHYSP (NUC153 domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4YXE2_PHYSP)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-19
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            +G SG+LL+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE QA+V++DY+FVT AE+
Sbjct:  330 QGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 390
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: M4BWD3_HYAAE (NUC153 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWD3_HYAAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-19
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            +G SG+LL+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE QA+V++DY+FVT AE+
Sbjct:  330 QGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 390
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: A0A662WTJ8_9STRA (NUC153 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTJ8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-19
Identity = 41/61 (67.21%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            +G SG+LL+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE QA+V++DY+FVT AE+
Sbjct:  332 QGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 392
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: A0A3F2RWL0_9STRA (NUC153 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWL0_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.510e-19
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    4 RGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            +G SG++L+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE QA+V++DY+FVT AE+
Sbjct:  305 QGKSGVILVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQATVYDDYRFVTRAEI 365
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: A0A8K1FME9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FME9_PYTOL)

HSP 1 Score: 89.0 bits (219), Expect = 3.420e-19
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 NRGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            ++G SG+LL+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE Q++V++DYKFVT  EV
Sbjct:  326 SQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQSTVYDDYKFVTRQEV 387
[Close]
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Match: A0A2D4BFQ6_PYTIN (Nucleolar protein 10, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFQ6_PYTIN)

HSP 1 Score: 88.6 bits (218), Expect = 4.620e-19
Identity = 40/62 (64.52%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 NRGDSGLLLMAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTAAEV 186
            ++G SG+LL+A EQ RV+SYY+P LG AP+W SFLD LTEELEEE Q++V++DYKFVT  E+
Sbjct:  187 SQGKSGVLLVAGEQERVMSYYIPELGIAPKWCSFLDSLTEELEEEAQSTVYDDYKFVTRKEI 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157749.3750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3M9_ECTSI5.210e-2586.89NUC153 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z278_9STRA1.110e-2070.49WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
H3GLA6_PHYRM1.350e-1967.21NUC153 domain-containing protein n=1 Tax=Phytophth... [more]
A0A3M6VIN9_9STRA1.350e-1967.21NUC153 domain-containing protein n=2 Tax=Peronospo... [more]
G4YXE2_PHYSP1.350e-1967.21NUC153 domain-containing protein n=21 Tax=Phytopht... [more]
M4BWD3_HYAAE1.350e-1967.21NUC153 domain-containing protein n=1 Tax=Hyalopero... [more]
A0A662WTJ8_9STRA1.350e-1967.21NUC153 domain-containing protein n=2 Tax=Nothophyt... [more]
A0A3F2RWL0_9STRA2.510e-1965.57NUC153 domain-containing protein n=3 Tax=Phytophth... [more]
A0A8K1FME9_PYTOL3.420e-1966.13Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BFQ6_PYTIN4.620e-1964.52Nucleolar protein 10, putative n=1 Tax=Pythium ins... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157749contigH-elongata_contig157749:106..291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog2880.D7G3M9
Preferred nameNOL10
KEGG koko:K14788
GOsGO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.rRNA processing
EggNOG OGsKOG2321@1,KOG2321@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size186
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.0683756-UTR-H-elongata_contig157749:105..1321622929930.0683756-UTR-H-elongata_contig157749:105..132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157749 106..132 +
1691679212.1291945-UTR-H-elongata_contig157749:105..1321691679212.1291945-UTR-H-elongata_contig157749:105..132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig157749 106..132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.0881085-CDS-H-elongata_contig157749:132..2911622929930.0881085-CDS-H-elongata_contig157749:132..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157749 133..291 +
1691679212.154409-CDS-H-elongata_contig157749:132..2911691679212.154409-CDS-H-elongata_contig157749:132..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157749 133..291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157749.3750.1prot_H-elongata_contig157749.3750.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157749 133..291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157749.3750.1

>prot_H-elongata_contig157749.3750.1 ID=prot_H-elongata_contig157749.3750.1|Name=mRNA_H-elongata_contig157749.3750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAAEQSRVLSYYVPNLGPAPRWASFLDRLTEELEEEGQASVFEDYKFVTA
AEV
back to top

mRNA from alignment at H-elongata_contig157749:106..291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157749.3750.1 ID=mRNA_H-elongata_contig157749.3750.1|Name=mRNA_H-elongata_contig157749.3750.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig157749:106..291+ (Himanthalia elongata Himel1 dioecious)
AACAGAGGGGACTCGGGGCTTTTGCTCATGGCGGCAGAGCAGTCACGAGT
GCTTTCCTACTACGTCCCCAACCTAGGGCCTGCCCCCCGCTGGGCCTCCT
TCCTGGATAGGCTTACCGAGGAGTTAGAGGAAGAAGGGCAGGCGTCGGTC
TTCGAGGACTACAAGTTCGTTACGGCGGCCGAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig157749:106..291+

>mRNA_H-elongata_contig157749.3750.1 ID=mRNA_H-elongata_contig157749.3750.1|Name=mRNA_H-elongata_contig157749.3750.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig157749:106..291+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGCAGAGCAGTCACGAGTGCTTTCCTACTACGTCCCCAACCTAGG
GCCTGCCCCCCGCTGGGCCTCCTTCCTGGATAGGCTTACCGAGGAGTTAG
AGGAAGAAGGGCAGGCGTCGGTCTTCGAGGACTACAAGTTCGTTACGGCG
GCCGAGGTAATGGCGGCAGAGCAGTCACGAGTGCTTTCCTACTACGTCCC
CAACCTAGGGCCTGCCCCCCGCTGGGCCTCCTTCCTGGATAGGCTTACCG
AGGAGTTAGAGGAAGAAGGGCAGGCGTCGGTCTTCGAGGACTACAAGTTC
GTTACGGCGGCCGAGGTA
back to top