mRNA_H-elongata_contig157724.3749.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157724.3749.1
Unique NamemRNA_H-elongata_contig157724.3749.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157724.3749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157724contigH-elongata_contig157724:978..1283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size308
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929930.0188365-CDS-H-elongata_contig157724:977..12831622929930.0188365-CDS-H-elongata_contig157724:977..1283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157724 978..1283 +
1691679212.1149426-CDS-H-elongata_contig157724:977..12831691679212.1149426-CDS-H-elongata_contig157724:977..1283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157724 978..1283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157724.3749.1prot_H-elongata_contig157724.3749.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157724 978..1283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157724.3749.1

>prot_H-elongata_contig157724.3749.1 ID=prot_H-elongata_contig157724.3749.1|Name=mRNA_H-elongata_contig157724.3749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
PPAPPCSGEIAPVDNGALMPKSCLIFTEMRTSTDTGGFRPTGETSTATKT
GFDKPTLWLYPTKEMKLFRLSVPFCRRVIETKSEENRIFDTGGQRGPLRA
S*
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mRNA from alignment at H-elongata_contig157724:978..1283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157724.3749.1 ID=mRNA_H-elongata_contig157724.3749.1|Name=mRNA_H-elongata_contig157724.3749.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig157724:978..1283+ (Himanthalia elongata Himel1 dioecious)
CCTCCGGCACCCCCTTGCTCAGGGGAGATTGCCCCGGTAGACAATGGCGC
TTTGATGCCCAAGTCGTGTCTCATATTCACGGAGATGCGCACATCTACTG
ACACTGGTGGCTTCCGTCCCACCGGTGAAACCTCGACGGCAACTAAGACC
GGCTTCGACAAACCCACTCTTTGGCTCTATCCGACCAAGGAGATGAAGTT
ATTCCGCTTGTCTGTTCCCTTTTGCAGGAGGGTCATCGAGACAAAGTCAG
AAGAAAATAGGATATTCGATACAGGTGGTCAACGGGGTCCTCTCCGCGCC
AGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig157724:978..1283+

>mRNA_H-elongata_contig157724.3749.1 ID=mRNA_H-elongata_contig157724.3749.1|Name=mRNA_H-elongata_contig157724.3749.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig157724:978..1283+ (Himanthalia elongata Himel1 dioecious)
CCTCCGGCACCCCCTTGCTCAGGGGAGATTGCCCCGGTAGACAATGGCGC
TTTGATGCCCAAGTCGTGTCTCATATTCACGGAGATGCGCACATCTACTG
ACACTGGTGGCTTCCGTCCCACCGGTGAAACCTCGACGGCAACTAAGACC
GGCTTCGACAAACCCACTCTTTGGCTCTATCCGACCAAGGAGATGAAGTT
ATTCCGCTTGTCTGTTCCCTTTTGCAGGAGGGTCATCGAGACAAAGTCAG
AAGAAAATAGGATATTCGATACAGGTGGTCAACGGGGTCCTCTCCGCGCC
AGCTGACCTCCGGCACCCCCTTGCTCAGGGGAGATTGCCCCGGTAGACAA
TGGCGCTTTGATGCCCAAGTCGTGTCTCATATTCACGGAGATGCGCACAT
CTACTGACACTGGTGGCTTCCGTCCCACCGGTGAAACCTCGACGGCAACT
AAGACCGGCTTCGACAAACCCACTCTTTGGCTCTATCCGACCAAGGAGAT
GAAGTTATTCCGCTTGTCTGTTCCCTTTTGCAGGAGGGTCATCGAGACAA
AGTCAGAAGAAAATAGGATATTCGATACAGGTGGTCAACGGGGTCCTCTC
CGCGCCAGCTGA
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