mRNA_H-elongata_contig15769.3748.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: D7G8K6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K6_ECTSI) HSP 1 Score: 623 bits (1607), Expect = 2.800e-212 Identity = 339/444 (76.35%), Postives = 366/444 (82.43%), Query Frame = 2
Query: 1172 GHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVD----SAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVG---GGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELRVLDLDRSLARAEGPEALERLAMHGEGWLIATTHVIADGDLRGSSACRVVTSDG----AMGD----AESPPPTSLVSPPVFLRQWTENTNVLFLVGCHGLLLLLDVVTGAELARAWACLPPVVEAEVDPDVGDLVVVSTADEGGVHRLTVRAAVLQESVEYDHKDAEMAARVSALTGYGAGRSLLPRRR 2458
GHVSVLDLWHRGRTVRYPVAA+RAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVA DLCMWRWLSPWGLALVTD AVFYWSV D GG SP+R S+GGG DRD +A+E+++ R RRPR+AFARRRTLT+P TLHRVYDYQ SADGRWG+LL V+ +WGGG G GNGYGSHSSGIEGGGGPVKVDLHSFE TTFEFEVLG +L+TMPGS+PPLNLLGLVVRGE GATELRVLDLDRSLA+AEG E LERLA GEGWLIATTHVIADGDLRGS + RVV DG +G+ E+PP LVSPPVFLRQWTENTNV+F+VGCHGLLL+LDVVTGAELARA AC P++EAEVDPDVGDLVVVSTAD GGVHRL VRAA L+ESVEY HKD EMA RVSALTGY R L P RR
Sbjct: 206 GHVSVLDLWHRGRTVRYPVAADRAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVATDLCMWRWLSPWGLALVTDGAVFYWSVLDGSMGGNSPERGG---STGGGGGLDRDLSGGGDAAANERESTARSRRPRQAFARRRTLTRPDTLHRVYDYQPSADGRWGLLLGPFVDSNWGGGXXXXXGALGNGYGSHSSGIEGGGGPVKVDLHSFERGTTFEFEVLGASLITMPGSSPPLNLLGLVVRGEGGATELRVLDLDRSLAQAEGAEDLERLAELGEGWLIATTHVIADGDLRGSCSYRVVGVDGRERGGLGEDAATGEAPP---LVSPPVFLRQWTENTNVVFVVGCHGLLLVLDVVTGAELARAQACRAPLIEAEVDPDVGDLVVVSTADGGGVHRLGVRAAALRESVEYYHKDPEMATRVSALTGYAGVRPLPPPRR 643
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A6H5KWH5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH5_9PHAE) HSP 1 Score: 640 bits (1651), Expect = 8.310e-209 Identity = 358/515 (69.51%), Postives = 388/515 (75.34%), Query Frame = 2
Query: 974 LPRVLEAAKGGGVLSSNPRLLCVC---------CVNGGVETPVRGTSPGAGVTIGAGDSTLPPVDDVANVVVREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVG---GGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELRVLDLDRSLARAEGPEALERLAMHGEGWLIATTHVIADGDLRGSSACRVVTSDG----AMGDA----ESPPPTSLVSPPVFLRQWTENTNVLFLVGCHGLLLLLDVVTGAELARAWACLPPVVEAEVDPDVGDLVVVSTADEGGVHRLTVRAAVLQESVEYDHKDAEMAARVSALTGYGAGRSLLPRRR 2458
LP VL AAK GGVLSSNPRLLCVC +P AG A GHVSVLDLWHRGRTVRYPVAA+RAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVA DLCMWRWLSPW LALVTD AVFYWSV D GG SP+R+ +A+E+++A R RRPR+AFARRRTLT+P TLHRVYDYQASADGRWG+LLCAVV+ DWGG G GNGYGSHSSGIEGGGGPVKVDLHSFE TTFEFEVLG +L+TMPGS+PPLNLLGLVVRGE GATELRVLDLDRSLA+AEG E ERL+ GEGWLIATTHVIADGDLRGS + RVV +DG +G+ E+PP LVSPPVFLRQW+ENTNV+FLVGCHGLLL+LDVVTGAELARA AC P++EAEVDPDVGDLVVVSTAD GGVHR+ VRAA L+ESVEY HKD EMA RVSALTGY R L P RR
Sbjct: 947 LPGVLRAAKSGGVLSSNPRLLCVCNXXXXXXXXXXXXXXXXXXXXXAPAAGQQDSA-------------------GHVSVLDLWHRGRTVRYPVAADRAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVATDLCMWRWLSPWSLALVTDGAVFYWSVLDGSMGGNSPERDXXXXXXXXXXXXXGAGDAAANERESAARSRRPRQAFARRRTLTRPDTLHRVYDYQASADGRWGLLLCAVVDSDWGGXXXXXXGALGNGYGSHSSGIEGGGGPVKVDLHSFERGTTFEFEVLGASLMTMPGSSPPLNLLGLVVRGEGGATELRVLDLDRSLAQAEGAEDFERLSELGEGWLIATTHVIADGDLRGSCSYRVVGADGRERGGLGEGAATGEAPP---LVSPPVFLRQWSENTNVVFLVGCHGLLLVLDVVTGAELARAQACRAPLIEAEVDPDVGDLVVVSTADGGGVHRMGVRAAALRESVEYYHKDPEMATRVSALTGYAGVRPLPPPRR 1439
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A835YLB9_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLB9_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.690e-20 Identity = 143/533 (26.83%), Postives = 203/533 (38.09%), Query Frame = 2
Query: 920 SAGARARPYRAHGRXXXXLPRVLEAAKGGGVLSSNPRLLCVCCVNGGVETPVRGTSPGAGVTIGAGDSTLPPVDDVANVVVREPGHVSVLDLWHRGRTVRYPVAAE--RAAMSPNQSESVIAVLGGGSLHV-------------FSIPRRCRLQEQAV------------------------------------AADLCMWRWLSPWGLALVTDTAVFYW-SVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVGGGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELR-----VLDLDRSLARAEGPEALERLAMHGEGWLIATTHVIADGD-----------------LRGSSACRVVTSDG-----AMGDAESPPPTSLVSPPVFLRQWTENTNVLFLVGCHGLLLLLDVVTGAELARAWACLPPVVEAEVDPD 2281
S GA A +AH R GG +L+SNPRLLC+CC E P G GV I LDLW +GRTV +P + + AA+SP + E+ + V G +L V S+PR+C + E A+ WRWL P L L+ + V+YW +++ A +P R R++ S+ +V S + + G P L + L RV Y SADG+W +L + ++ D G G V +D+ F + TF LG ALL MPGS+PP+NLL LVV+ E G ELR +++ S + + + R H H+ + D +R + R+ G A A+ +S PP L W N +VL +V G+L L DV T A L PV+EAEVD +
Sbjct: 819 SPGASAATVKAHRR-------------GGLLLASNPRLLCLCCR----EDPSGGNGGAPGVAI--------------------------LDLWQQGRTVFFPTSTKPLAAAISPFRGETYVCVQTGTALQVNAATAAISALKEVHSLPRQCVIAELALDDAALRDGGALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRWRWLGPGVLVLIAEQGVYYWPALAKGAAAAAAPQRGFSRTTEVRPSAA---AVTSRSHRLSHGSPLLP--------LLLQSLGLARVAGYDCSADGKWAVL--SALHAD----------------------GSGAVALDVRCFPARATFAMPALGAALLVMPGSSPPVNLLALVVQNEMGQPELRGEPKRCSNVNFSCSNFKYGASQSR--QHQSVTPRVQLHMRSSSDSDXXXXXXXXXXXXXXIMRILGSRRLYRRHGHDRRHAQLAAKWKHCSSTRCPPAALAHWPRNPHVLCVVARDGVLRLFDVHTCARLHCCRVASGPVLEAEVDAE 1271
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A6H5K7T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T4_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 2.280e-10 Identity = 47/169 (27.81%), Postives = 72/169 (42.60%), Query Frame = 2
Query: 1178 VSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAV-AADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGT--LHRVYDYQASADGRWGMLLCA 1675
V+++DLW+ G T RYP+ A +SP E +IA+L + VFS+ R R + + ++ + +W+W+ + +VT V W V + P+K F R R + T R YDYQ +ADGRWG+L A
Sbjct: 1303 VAIVDLWNGGGTTRYPIGCVSAILSPRTDEQIIALLSERGMQVFSVTHRVRRRHVVIKSSSVRLWKWIDDDVIVIVTKEEVLRWDVRGTSM---------------------------------------PKKLFTRNRPYSPSPTDGASRAYDYQCTADGRWGLLFVA 1432
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A164VVK7_9AGAM (Clathrin heavy chain n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164VVK7_9AGAM) HSP 1 Score: 73.6 bits (179), Expect = 1.540e-9 Identity = 68/266 (25.56%), Postives = 111/266 (41.73%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVGGGSGNGYGSHSSGIEGGGGPVKVDLHSFE--MKTTFEFEVLGGALLTMPGSNPPLNLLGLVVRGEAGATELRVLDLDRSLARA 1951
V E V ++DL +R P+ A+ A M P Q ++A+ G L VF+I + +++ D+ W+W+S + LVTDTAVF+WS+ D+ SP P K F R L H++ +Y+ +AD +W +L+ G+ G +GN + I G + L+S E + E A L + G+ P +L VR GA +L ++++D + A
Sbjct: 43 VNEQNQVVIIDLADANNVLRRPITADSAIMHPKQK--ILALKAGRQLQVFNIETKQKVKSHMTTEDVVFWKWISDSTIGLVTDTAVFHWSIDDA----SSP----------------------------------PAKIFDRHANLAG----HQIINYRVTADEKWVVLI----------GISGNTGN---PSAFKIRG-----SMQLYSRERGVSQPIEGHAAAFAELRLDGNAKPTSLFTFAVRTATGA-KLHIVEIDHAAPNA 245
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A812CWS6_SEPPH (Clathrin heavy chain n=3 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812CWS6_SEPPH) HSP 1 Score: 72.4 bits (176), Expect = 3.310e-9 Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVS--DSHAGGQSPDR 1468
V E V ++DL +R P++A+ A M+P + VIA+ G +L +F+I + +++ A+ D+ W+W+S +ALVTDTAV++WS+ D H G P +
Sbjct: 44 VGETAQVVIIDLNDATNPIRRPISADSAIMNP--ASKVIALKAGKTLQIFNIEMKSKMKAHAMTEDVTFWKWISVNTVALVTDTAVYHWSMEGPDDHTGDSQPQK 146
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A165U8B5_9AGAM (Clathrin heavy chain n=3 Tax=Gloeophyllales TaxID=452339 RepID=A0A165U8B5_9AGAM) HSP 1 Score: 71.6 bits (174), Expect = 5.990e-9 Identity = 65/260 (25.00%), Postives = 109/260 (41.92%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSVSDSHAGGQSPDRNAGRSSSGGGSSGDRDSVDSAHEKDAAGRFRRPRKAFARRRTLTKPGTLHRVYDYQASADGRWGMLLCAVVNDDWGGGVGGGSGNGYGSHSSGIEGGGGPVKVDLHSFEMKTTFEFEVLGGALLTMP--GSNPPLNLLGLVVRGEAGATELRVLDLD 1933
V E V ++DL +R P+ A+ A M P Q ++A+ G +L VF+I + +++ D+ W+W+S L L+TDTAV++WS+SD P+K F R TL ++ +Y+AS+D +W ++L + SGN + ++G ++ L+S E + E A M G + P+ L VR GA +L V+++D
Sbjct: 44 VNEQNQVVIIDLVDANNVLRRPITADSAIMHPQQK--ILALKAGRTLQVFNIETKQKVKSYVNNEDIVFWKWISETTLGLITDTAVYHWSISDQA---------------------------------------NPQKIFDRHPTLAGA----QIINYRASSDEKW-LVLVGI------------SGNSTNPSAFKVQG-----RMQLYSRERGVSQPIEGHAAAFAEMKIEGHSKPVKLFTFSVRTATGA-KLHVVEID 239
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A2D4GPK7_MICCO (Uncharacterized protein (Fragment) n=1 Tax=Micrurus corallinus TaxID=54390 RepID=A0A2D4GPK7_MICCO) HSP 1 Score: 65.5 bits (158), Expect = 6.410e-9 Identity = 31/91 (34.07%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSV 1432
V E V ++DL +R P++AE A M+P + VIA+ G +L +F+I + +++ +A ++ W+W+S +ALVT+TAV++W++
Sbjct: 23 VGEQAQVVIVDLSDPTTPIRRPISAESAIMNP--ASKVIALKAGKTLQIFNIEMKSKMKAHTMAEEVIFWKWISVNTVALVTETAVYHWTM 111
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A212D730_CEREH (CLTC (Fragment) n=1 Tax=Cervus elaphus hippelaphus TaxID=46360 RepID=A0A212D730_CEREH) HSP 1 Score: 65.1 bits (157), Expect = 7.920e-9 Identity = 30/91 (32.97%), Postives = 55/91 (60.44%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSV 1432
V E V ++D+ +R P++A+ A M+P + VIA+ G +L +F+I + +++ + D+ W+W+S +ALVTD AV++WS+
Sbjct: 30 VGEQAQVVIIDMNDPSNPIRRPISADSAIMNP--ASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLKTVALVTDNAVYHWSM 118
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Match: A0A183ILW3_9BILA (Uncharacterized protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183ILW3_9BILA) HSP 1 Score: 65.5 bits (158), Expect = 8.130e-9 Identity = 30/91 (32.97%), Postives = 57/91 (62.64%), Query Frame = 2
Query: 1160 VREPGHVSVLDLWHRGRTVRYPVAAERAAMSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLALVTDTAVFYWSV 1432
V E V V+D+ +R P++A+ A M+P + VIA+ G +L +F+I + +++ ++ D+ W+W++ +ALVT+TAV++WS+
Sbjct: 13 VGESAQVVVIDMADHTNPLRRPISADSAIMNP--ASKVIALKAGRTLQIFNIEMKSKMKSHSMTEDVVFWKWINVNTVALVTETAVYHWSM 101 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15769.3748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig15769.3748.1 >prot_H-elongata_contig15769.3748.1 ID=prot_H-elongata_contig15769.3748.1|Name=mRNA_H-elongata_contig15769.3748.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=406bp MSPNQSESVIAVLGGGSLHVFSIPRRCRLQEQAVAADLCMWRWLSPWGLAback to top mRNA from alignment at H-elongata_contig15769:3785..7226+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig15769.3748.1 ID=mRNA_H-elongata_contig15769.3748.1|Name=mRNA_H-elongata_contig15769.3748.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3442bp|location=Sequence derived from alignment at H-elongata_contig15769:3785..7226+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig15769:3785..7226+ >mRNA_H-elongata_contig15769.3748.1 ID=mRNA_H-elongata_contig15769.3748.1|Name=mRNA_H-elongata_contig15769.3748.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2436bp|location=Sequence derived from alignment at H-elongata_contig15769:3785..7226+ (Himanthalia elongata Himel1 dioecious)back to top |