mRNA_H-elongata_contig157379.3740.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157379.3740.1
Unique NamemRNA_H-elongata_contig157379.3740.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5JRV2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV2_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.290e-13
Identity = 39/71 (54.93%), Postives = 46/71 (64.79%), Query Frame = 1
Query:   10 VTSGLENIRMYLDDAIGFDDS-SVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPN 219
            V  GLE +  YLDD I FD+  S+ HV  +  FF RLR H LKLSP KTR GAT  +FLGH IS  G+ P+
Sbjct:  153 VVHGLERVLAYLDDVICFDEEPSLGHVLNMIEFFRRLRQH-LKLSPGKTRVGATHANFLGHTISPAGVSPD 222          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: UPI001899E8EF (uncharacterized protein LOC119444767 n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001899E8EF)

HSP 1 Score: 66.2 bits (160), Expect = 6.380e-11
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPNL 222
            MR V +G+ ++  Y DD +   D+   HV TL  FF ++R  +L + P+K+  G+T V+FLGH++ H  +RP L
Sbjct: 1177 MRKVVAGISHVHHYFDDVLIATDTWETHVNTLECFFRQVRRGHLTIKPSKSEVGSTTVNFLGHIVGHGVLRPQL 1250          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5H2J7_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H2J7_9HEMI)

HSP 1 Score: 63.2 bits (152), Expect = 7.460e-10
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
            VT GL+N+R Y+DD +    S  +H+  L T F R R + + ++  K   G ++++FLGH+++ DG++P
Sbjct:  118 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 186          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5HNB0_9HEMI (Reverse transcriptase domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HNB0_9HEMI)

HSP 1 Score: 63.2 bits (152), Expect = 7.510e-10
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
            VT GL+N+R Y+DD +    S  +H+  L T F R R + + ++  K   G ++++FLGH+++ DG++P
Sbjct:  406 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 474          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5GEF8_9HEMI (RNA-directed DNA polymerase n=4 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GEF8_9HEMI)

HSP 1 Score: 63.2 bits (152), Expect = 7.700e-10
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
            VT GL+N+R Y+DD +    S  +H+  L T F R R + + ++  K   G ++++FLGH+++ DG++P
Sbjct:  205 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 273          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A131XKF8_9ACAR (RNA-directed DNA polymerase n=1 Tax=Hyalomma excavatum TaxID=257692 RepID=A0A131XKF8_9ACAR)

HSP 1 Score: 63.2 bits (152), Expect = 7.710e-10
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPNL 222
            MR V +G+ ++  Y DD +   D+   H  TL  FF ++R  +L + P+K+  G+T V FLGH++ H  +RP L
Sbjct:  788 MRKVVAGIPHVHHYFDDVLIATDTWETHTDTLECFFRQVRRGHLTIKPSKSEIGSTSVKFLGHIVGHGVLRPQL 861          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6H5H8T1_9HEMI (RNA-directed DNA polymerase n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5H8T1_9HEMI)

HSP 1 Score: 63.2 bits (152), Expect = 7.750e-10
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   10 VTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
            VT GL+N+R Y+DD +    S  +H+  L T F R R + + ++  K   G ++++FLGH+++ DG++P
Sbjct:  406 VTRGLDNVRAYIDDCLVASSSVEEHLNDLRTLFERFRAYGIVINAAKCEFGVSQIEFLGHLVTQDGVKP 474          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A085NA80_9BILA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085NA80_9BILA)

HSP 1 Score: 62.8 bits (151), Expect = 9.940e-10
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 MRLVTSGLE--NIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPN 219
            M  V +GL+     +YLDD I F  S+ +H+  LA  F RLR   LK++ +K R     V FLGHV+ HDGIRP+
Sbjct:   68 MERVLAGLKWNTCLVYLDDIIIFSRSADEHIEQLARVFQRLRTAGLKVNASKCRLFRKEVQFLGHVVGHDGIRPD 142          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A0A9Y3F4_LYGHE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y3F4_LYGHE)

HSP 1 Score: 58.9 bits (141), Expect = 1.420e-9
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRP 216
            M  VT GL+N+ +YLDD +    S  +H+  L   F R + + + ++  K   G T ++FLGH++S DG++P
Sbjct:    4 MNEVTRGLDNVVVYLDDCLISSTSEEEHLNDLRKLFNRFKEYGIVINAAKCEFGKTEIEFLGHLVSPDGVKP 75          
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Match: A0A6B0VFR6_IXORI (RNA-directed DNA polymerase n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VFR6_IXORI)

HSP 1 Score: 62.4 bits (150), Expect = 1.450e-9
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNKTRTGATRVDFLGHVISHDGIRPNL 222
            MR V  GL N+  Y DD +   ++  +H+ TL +FF R+R   L + P K+  G   V FLGH+I H+ +RP +
Sbjct: 1204 MRKVVQGLPNVYHYFDDVLIATENWEEHLETLKSFFQRVRDAGLTIRPTKSEVGFASVKFLGHIIGHNLLRPQI 1277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157379.3740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRV2_9PHAE2.290e-1354.93Integrase catalytic domain-containing protein n=1 ... [more]
UPI001899E8EF6.380e-1139.19uncharacterized protein LOC119444767 n=1 Tax=Derma... [more]
A0A6H5H2J7_9HEMI7.460e-1036.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5HNB0_9HEMI7.510e-1036.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5GEF8_9HEMI7.700e-1036.23RNA-directed DNA polymerase n=4 Tax=Nesidiocoris t... [more]
A0A131XKF8_9ACAR7.710e-1037.84RNA-directed DNA polymerase n=1 Tax=Hyalomma excav... [more]
A0A6H5H8T1_9HEMI7.750e-1036.23RNA-directed DNA polymerase n=2 Tax=Nesidiocoris t... [more]
A0A085NA80_9BILA9.940e-1045.33Reverse transcriptase domain-containing protein (F... [more]
A0A0A9Y3F4_LYGHE1.420e-936.11Reverse transcriptase domain-containing protein (F... [more]
A0A6B0VFR6_IXORI1.450e-939.19RNA-directed DNA polymerase n=1 Tax=Ixodes ricinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157379contigH-elongata_contig157379:205..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.4864469-CDS-H-elongata_contig157379:204..4351622929929.4864469-CDS-H-elongata_contig157379:204..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157379 205..435 +
1691679211.9014134-CDS-H-elongata_contig157379:204..4351691679211.9014134-CDS-H-elongata_contig157379:204..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157379 205..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157379.3740.1prot_H-elongata_contig157379.3740.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157379 205..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157379.3740.1

>prot_H-elongata_contig157379.3740.1 ID=prot_H-elongata_contig157379.3740.1|Name=mRNA_H-elongata_contig157379.3740.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MRLVTSGLENIRMYLDDAIGFDDSSVKHVATLATFFARLRLHNLKLSPNK
TRTGATRVDFLGHVISHDGIRPNLCV*
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mRNA from alignment at H-elongata_contig157379:205..435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157379.3740.1 ID=mRNA_H-elongata_contig157379.3740.1|Name=mRNA_H-elongata_contig157379.3740.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig157379:205..435+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCTTGTCACAAGTGGTCTCGAGAACATACGAATGTACCTCGACGA CGCCATCGGCTTCGACGATTCCTCCGTCAAGCATGTAGCTACCTTAGCTA CCTTCTTTGCACGCCTGCGACTTCACAATCTGAAACTCTCTCCGAACAAA ACTCGGACCGGCGCGACTCGTGTCGACTTCCTGGGACACGTCATATCGCA CGACGGCATACGTCCCAATCTCTGCGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig157379:205..435+

>mRNA_H-elongata_contig157379.3740.1 ID=mRNA_H-elongata_contig157379.3740.1|Name=mRNA_H-elongata_contig157379.3740.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig157379:205..435+ (Himanthalia elongata Himel1 dioecious)
ATGCGCCTTGTCACAAGTGGTCTCGAGAACATACGAATGTACCTCGACGA
CGCCATCGGCTTCGACGATTCCTCCGTCAAGCATGTAGCTACCTTAGCTA
CCTTCTTTGCACGCCTGCGACTTCACAATCTGAAACTCTCTCCGAACAAA
ACTCGGACCGGCGCGACTCGTGTCGACTTCCTGGGACACGTCATATCGCA
CGACGGCATACGTCCCAATCTCTGCGTATAAATGCGCCTTGTCACAAGTG
GTCTCGAGAACATACGAATGTACCTCGACGACGCCATCGGCTTCGACGAT
TCCTCCGTCAAGCATGTAGCTACCTTAGCTACCTTCTTTGCACGCCTGCG
ACTTCACAATCTGAAACTCTCTCCGAACAAAACTCGGACCGGCGCGACTC
GTGTCGACTTCCTGGGACACGTCATATCGCACGACGGCATACGTCCCAAT
CTCTGCGTATAA
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