mRNA_H-elongata_contig15737.3738.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig15737.3738.1
Unique NamemRNA_H-elongata_contig15737.3738.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig15737.3738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig15737contigH-elongata_contig15737:2704..3189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat domain-containing protein 13
Ec32 orthologEc-20_001920.2
Exons2
Model size256
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929929.4095702-CDS-H-elongata_contig15737:2703..28741622929929.4095702-CDS-H-elongata_contig15737:2703..2874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15737 2704..2874 +
1691679211.8623958-CDS-H-elongata_contig15737:2703..28741691679211.8623958-CDS-H-elongata_contig15737:2703..2874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15737 2704..2874 +
1622929929.418814-CDS-H-elongata_contig15737:3106..31871622929929.418814-CDS-H-elongata_contig15737:3106..3187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15737 3107..3187 +
1691679211.8760965-CDS-H-elongata_contig15737:3106..31871691679211.8760965-CDS-H-elongata_contig15737:3106..3187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig15737 3107..3187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig15737.3738.1prot_H-elongata_contig15737.3738.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig15737 2704..3187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig15737.3738.1

>prot_H-elongata_contig15737.3738.1 ID=prot_H-elongata_contig15737.3738.1|Name=mRNA_H-elongata_contig15737.3738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
ARTYSTVPFDDSSSRSHHGPISQDQRIRVTAEGRGPSALEMSRGKASPPS
PDNGVYDAPVQFQRMPKPPGWQEEQAVEIRHDWI
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mRNA from alignment at H-elongata_contig15737:2704..3189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig15737.3738.1 ID=mRNA_H-elongata_contig15737.3738.1|Name=mRNA_H-elongata_contig15737.3738.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=486bp|location=Sequence derived from alignment at H-elongata_contig15737:2704..3189+ (Himanthalia elongata Himel1 dioecious)
GCAAGGACGTACTCCACGGTACCGTTCGATGACTCCTCGTCGAGATCCCA
CCATGGGCCTATCTCTCAGGATCAGCGCATCCGGGTCACGGCAGAGGGAA
GAGGGCCGTCCGCGTTAGAAATGAGTCGAGGCAAGGCGTCGCCACCGTCC
CCAGACAATGGCGTTTACGATGTGAGCTCGTGTACTGTCGTTTCCTCGCG
TTGCGCTGAAATGTCGGAAGTTTTTATGGCGGGGTTAAAATTTAGCGCGG
GGTGGGGTGGGGGGTTTTGTTGTGAGTGTGCCGGCTTTTTACCGGCTTTT
GCGACAATGACTGACGAAAGCGCTTCGTTTCTGAACAGCCGACCTACAAG
CCATGTTGTAGTTCCAATAATTTTCATGCCGTACGATTCCCTTACGTGAG
CAGGCCCCGGTCCAGTTTCAGAGAATGCCGAAACCGCCGGGATGGCAGGA
AGAGCAGGCCGTGGAGATCCGGCACGACTGGATAAC
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Coding sequence (CDS) from alignment at H-elongata_contig15737:2704..3189+

>mRNA_H-elongata_contig15737.3738.1 ID=mRNA_H-elongata_contig15737.3738.1|Name=mRNA_H-elongata_contig15737.3738.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig15737:2704..3189+ (Himanthalia elongata Himel1 dioecious)
GCAAGGACGTACTCCACGGTACCGTTCGATGACTCCTCGTCGAGATCCCA
CCATGGGCCTATCTCTCAGGATCAGCGCATCCGGGTCACGGCAGAGGGAA
GAGGGCCGTCCGCGTTAGAAATGAGTCGAGGCAAGGCGTCGCCACCGTCC
CCAGACAATGGCGTTTACGATGCAAGGACGTACTCCACGGTACCGTTCGA
TGACTCCTCGTCGAGATCCCACCATGGGCCTATCTCTCAGGATCAGCGCA
TCCGGGTCACGGCAGAGGGAAGAGGGCCGTCCGCGTTAGAAATGAGTCGA
GGCAAGGCGTCGCCACCGTCCCCAGACAATGGCGTTTACGATGCCCCGGT
CCAGTTTCAGAGAATGCCGAAACCGCCGGGATGGCAGGAAGAGCAGGCCG
TGGAGATCCGGCACGACTGGATAGCCCCGGTCCAGTTTCAGAGAATGCCG
AAACCGCCGGGATGGCAGGAAGAGCAGGCCGTGGAGATCCGGCACGACTG
GATA
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