mRNA_H-elongata_contig157363.3737.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI) HSP 1 Score: 58.9 bits (141), Expect = 1.010e-7 Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1
Query: 19 WVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTR 282
++ D+G++ H+ DP L DY A +E A G L+PVAGYG+LR+ G ++ LK VAH P+ NL+ KRLT+
Sbjct: 751 FILDTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVTTQAG--------LKIELKDVAHCPS-AIGNLIGGKRLTK 829
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH) HSP 1 Score: 55.8 bits (133), Expect = 1.650e-7 Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 13 EFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYP 312
+ W+ DSGAT+HMT +P + TP V +A G P+ G G + L T+ +TL V VP+L +NLLS K++T+ F + +YP
Sbjct: 21 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 106
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2I0W3I8_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W3I8_9ASPA) HSP 1 Score: 56.6 bits (135), Expect = 6.380e-7 Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1
Query: 19 WVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLT 279
W DSGA+ H+T DP+ L++ P D + A GT LP+ G QG ++ R+L L+ + HVP+L +NLLS ++LT
Sbjct: 186 WYLDSGASSHLTSDPLQLQNSQPYIGSDSISIANGTSLPITSTG-------QGLLPLPNTQRKLHLQKLLHVPSLT-HNLLSIQKLT 264
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2P6S473_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S473_ROSCH) HSP 1 Score: 55.8 bits (133), Expect = 1.190e-6 Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 13 EFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYP 312
+ W+ DSGAT+HMT +P + TP V +A G P+ G G + L T+ +TL V VP+L +NLLS K++T+ F + +YP
Sbjct: 236 DMWIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQFYCCVILYP 321
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5A7UAK9_CUCME (Reverse transcriptase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UAK9_CUCME) HSP 1 Score: 55.1 bits (131), Expect = 2.150e-6 Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 1
Query: 7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYPAAALIRPRRGG 345
G+ W+ DSGAT+H+T YTP +++ A G+L P+AG G + +L D +LK+V HVP+L N LLS ++T P + + G
Sbjct: 233 GTNPWILDSGATDHLTGFSEHFVSYTPCAGNEKIRIADGSLAPIAGKGQI-VLFDG-----------FSLKNVLHVPSLSYN-LLSISKITHELHCKATFLPESVCFQDLNSG 332
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A2I0VU15_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VU15_9ASPA) HSP 1 Score: 53.9 bits (128), Expect = 5.610e-6 Identity = 32/87 (36.78%), Postives = 47/87 (54.02%), Query Frame = 1
Query: 19 WVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLT 279
W DSGA+ H+T DP+ L+ P D + A GT LP+ QG ++ R+L L+ + HVP+L +NLLS ++LT
Sbjct: 186 WYLDSGASSHLTSDPLQLQHPLPYTGSDSISIANGTSLPINS-------TSQGILPLPNTPRKLYLQKLLHVPSLT-HNLLSIQKLT 264
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5D3BVA8_CUCME (TMV resistance protein N n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BVA8_CUCME) HSP 1 Score: 53.5 bits (127), Expect = 7.200e-6 Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 1
Query: 7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTR 282
G+ W+ DSGAT+H+T YTP + + A G+L P+AG G + +L D +L++V HVP L N LLS ++TR
Sbjct: 288 GTNLWILDSGATDHLTGFSEHFVTYTPCAGNEEIWIADGSLAPIAGKGQI-VLYDG-----------FSLQNVLHVPKLSYN-LLSISKITR 366
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: UPI00063AE43A (uncharacterized protein LOC105775269 n=1 Tax=Gossypium raimondii TaxID=29730 RepID=UPI00063AE43A) HSP 1 Score: 53.1 bits (126), Expect = 9.640e-6 Identity = 32/112 (28.57%), Postives = 50/112 (44.64%), Query Frame = 1
Query: 10 SEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYPAAALIRPRRGG 345
+ W DSGAT H+T DP GL + P ++ G +PVA + G+S F S R LK++ HVP + +N L+S + +P ++ + G
Sbjct: 345 NNVWFPDSGATNHITNDPDGLYEVAPYTGKQKLFMGNGLSVPVA---------NTGSSSFVSSNRVFHLKNILHVPQICKN-LMSVAQFATDNSVYFEFHPRHCFVKDIKTG 446
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5A7UDS7_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7UDS7_CUCME) HSP 1 Score: 52.0 bits (123), Expect = 2.640e-5 Identity = 34/113 (30.09%), Postives = 52/113 (46.02%), Query Frame = 1
Query: 7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTRFFDAPMRVYPAAALIRPRRGG 345
G+ W+ DSGAT+H+T YTP +++ G+L P+AG G + +L D +L++V HVP L N LLS ++TR P + + G
Sbjct: 257 GTNPWILDSGATDHLTGFSEHFVTYTPCVGNEKIRITDGSLAPIAGKGQI-VLFDG-----------FSLQNVLHVPKLSYN-LLSIGKITRELHCKATFLPKSVCFQDLNSG 356
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Match: A0A5A7VD20_CUCME (Beta-galactosidase n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7VD20_CUCME) HSP 1 Score: 51.2 bits (121), Expect = 4.870e-5 Identity = 31/92 (33.70%), Postives = 47/92 (51.09%), Query Frame = 1
Query: 7 GSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNSKFTDSTRQLTLKHVAHVPNLGQNNLLSTKRLTR 282
G+ W+ DS AT+H+T YTP +++ G+L P+AG G + +L D +L++V HVP L N LLS ++TR
Sbjct: 102 GTNLWILDSRATDHLTGFSEHFVTYTPCAGNEKIRIVDGSLAPIAGKGQI-ILYDG-----------FSLQNVLHVPKLSYN-LLSISKITR 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157363.3737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig157363.3737.1 >prot_H-elongata_contig157363.3737.1 ID=prot_H-elongata_contig157363.3737.1|Name=mRNA_H-elongata_contig157363.3737.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp RRGSEFWVNDSGATEHMTQDPVGLEDYTPAPAGDRVESAGGTLLPVAGYGback to top mRNA from alignment at H-elongata_contig157363:285..629- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig157363.3737.1 ID=mRNA_H-elongata_contig157363.3737.1|Name=mRNA_H-elongata_contig157363.3737.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=345bp|location=Sequence derived from alignment at H-elongata_contig157363:285..629- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig157363:285..629- >mRNA_H-elongata_contig157363.3737.1 ID=mRNA_H-elongata_contig157363.3737.1|Name=mRNA_H-elongata_contig157363.3737.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig157363:285..629- (Himanthalia elongata Himel1 dioecious)back to top |