mRNA_H-elongata_contig157250.3732.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: D7FRT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRT0_ECTSI) HSP 1 Score: 222 bits (565), Expect = 3.330e-70 Identity = 100/129 (77.52%), Postives = 115/129 (89.15%), Query Frame = 1
Query: 19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFYRR 405
+QPLWLGGTQG+ ++FIHTYPEV GAQ + E+EGLYF+G ++SAS++V+DGPGSGFNFRFF Q T+W GELEAEV RGLWRP ASKMALLRVRDRKGPD+AKPMWADLSQMAGG+YL AMEEFYRR
Sbjct: 180 IQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMESASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFYRR 308
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A835YZZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ3_9STRA) HSP 1 Score: 156 bits (394), Expect = 2.540e-44 Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 1
Query: 19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAG 366
+QP++LGGT G +SLSFIHTYPEV A+ + ED GL+F G+ SA V +G GSGFNFRFFVQ+T W PGEL AEV G W +A KM+LLRVRDRKGPD AKPMW DL MAG
Sbjct: 187 IQPIFLGGTLGSQSLSFIHTYPEVAQAEQVTED-GLFFGGDFKSAVHCVREGIGSGFNFRFFVQYTQWGPGELGAEVNAGRWHAVSAGKMSLLRVRDRKGPDTAKPMWTDLLTMAG 301
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A4D9D9B7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9B7_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.960e-28 Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
+QP+ LGGT + +HTYPE+ A + D GL+F G +A +V + S F+FF+Q TLWAPGEL+ E+ +W PA SK +L+ R R+GP +AKP+W ++ ++ GG +L +E Y
Sbjct: 188 IQPVHLGGTGESDGIFMVHTYPELERATQVTND-GLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEDKVWYPAQVSKDVILKNRGREGPKMAKPLWTEVLELMGGSFLEIKKELY 313
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: B7G772_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G772_PHATC) HSP 1 Score: 95.5 bits (236), Expect = 1.350e-20 Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGE---IDSASRMVSDGPGSGFNFRFFVQFTLWAPG-ELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
+QPLW GG L +H P V A+PL DEGLY+ G+ A V+D +GF+F+FFVQ T+W EL+ E+ G W A SK L + RDR G AKP+W ++ ++ GG Y + Y
Sbjct: 256 IQPLWFGGVDNVSAGLDMLHQCPTVPDAEPL-SDEGLYWGGDPALAQDAMDEVTDKVLTGFDFKFFVQSTVWGSSKELQKEIDNGTWFTARVSKEVLFKSRDRMGTRRAKPLWTEVMELLGGKYKDTRDMLY 386
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A1E7FXR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXR6_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 9.570e-20 Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 1
Query: 19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPG-----SGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
+QPLW GG L +H P V AQ + ED G+Y+ G+ A + D P SGF+F+FFVQ T+W+ G L+ EV +W A S L + RDR G AKP+W ++ + G +Y + FY
Sbjct: 194 IQPLWFGGIDSLSVGLDMLHLCPTVNDAQQITED-GMYWGGDPTQAQDAMED-PSLDRIYSGFDFKFFVQSTIWSSGVLQGEVDDNIWFQANVSNNVLFKSRDRMGTKKAKPLWTEILDLMGDEYSDITKRFY 324
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A1Z5J7Y0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7Y0_FISSO) HSP 1 Score: 92.4 bits (228), Expect = 1.490e-19 Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 1
Query: 19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDG----PGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
+QPLW GG L +H P V GA+ L ED GL++ G+ A + D P SGF+F+FFVQ T++APG+ E EV + A S + + RDR G AKP+W ++ ++ GG Y + Y
Sbjct: 224 IQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTED-GLFWGGDPTEAQDAMEDPSLERPMSGFDFKFFVQSTIFAPGQAEKEVASSTFFLANVSTDVIFKSRDRMGTKRAKPLWTEIMELMGGKYEATKNKLY 354
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A7S4AE40_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AE40_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.360e-18 Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 1
Query: 19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPG-----SGFNFRFFVQFTLWAP-GELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
+QPLW GG L +H P V A + ED +Y+ G+ A + D P SGF+F+FFVQ T+W+ G L++EV +W PA S+ L + RDR G AKP+WA++ + G Y ME FY
Sbjct: 308 IQPLWFGGIDSLSVGLDMLHLCPTVRDATKITEDN-VYWGGDPAQAQDAMED-PSLDRMYSGFDFKFFVQSTIWSNVGTLQSEVDDKIWFPAKVSQKILFKSRDRMGTKKAKPLWAEIMGLMGDKYSVVMENFY 439
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A448ZN63_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZN63_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 3.910e-17 Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 1
Query: 19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPG-----SGFNFRFFVQFTLWA-PGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
+QPLW GG L +H P V A + ED +Y+ G+ A + D P SGF+F+FFVQ T+W+ G L++EV +W PA S+ + + RDR G A+P+W ++ + G +Y M+ FY
Sbjct: 295 IQPLWFGGIDSLSVGLDMLHLCPTVKDATKITEDN-VYWGGDPAQAQDAMED-PSLDRAYSGFDFKFFVQSTIWSNAGSLQSEVDDKIWFPAKVSQNIIFKSRDRMGTKKAQPLWTEIMGLMGDEYGEIMKNFY 426
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: W7TWF9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWF9_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.060e-11 Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEV 249
+QP+ LGGT + IHTYPE+ A + D GL+F G +A +V + S F+FF+Q TLWAPGEL+ E+
Sbjct: 188 IQPVHLGGTGESDGIFMIHTYPELERATQVTND-GLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREI 263
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A271J8I3_9BACT (UPF0301 protein B1759_11175 n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A271J8I3_9BACT) HSP 1 Score: 64.7 bits (156), Expect = 3.160e-10 Identity = 34/116 (29.31%), Postives = 60/116 (51.72%), Query Frame = 1
Query: 28 LWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDY 375
LW+GG ++L ++H + ++ G+ P+LED ++F G+ ++ ++ G RFFV ++ W G+L+AEV G W + L RD D +W + + GG+Y
Sbjct: 63 LWMGGPVQPETLHYLHPFGDLDGSLPVLED--VFFGGDFETLRAAIAAGDLDPDRARFFVGYSGWGAGQLDAEVDEGAW-------IVLPGNRDLVFADGDDALWRQILRQLGGEY 169 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig157250.3732.1 >prot_H-elongata_contig157250.3732.1 ID=prot_H-elongata_contig157250.3732.1|Name=mRNA_H-elongata_contig157250.3732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp MFLPRALQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSback to top mRNA from alignment at H-elongata_contig157250:649..1291- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig157250.3732.1 ID=mRNA_H-elongata_contig157250.3732.1|Name=mRNA_H-elongata_contig157250.3732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=643bp|location=Sequence derived from alignment at H-elongata_contig157250:649..1291- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig157250:649..1291- >mRNA_H-elongata_contig157250.3732.1 ID=mRNA_H-elongata_contig157250.3732.1|Name=mRNA_H-elongata_contig157250.3732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig157250:649..1291- (Himanthalia elongata Himel1 dioecious)back to top |