mRNA_H-elongata_contig157250.3732.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157250.3732.1
Unique NamemRNA_H-elongata_contig157250.3732.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: D7FRT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRT0_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 3.330e-70
Identity = 100/129 (77.52%), Postives = 115/129 (89.15%), Query Frame = 1
Query:   19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFYRR 405
            +QPLWLGGTQG+  ++FIHTYPEV GAQ + E+EGLYF+G ++SAS++V+DGPGSGFNFRFF Q T+W  GELEAEV RGLWRP  ASKMALLRVRDRKGPD+AKPMWADLSQMAGG+YL AMEEFYRR
Sbjct:  180 IQPLWLGGTQGENGITFIHTYPEVEGAQAISEEEGLYFSGNMESASKVVTDGPGSGFNFRFFAQITVWKAGELEAEVDRGLWRPVVASKMALLRVRDRKGPDVAKPMWADLSQMAGGEYLAAMEEFYRR 308          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A835YZZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZZ3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.540e-44
Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 1
Query:   19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAG 366
            +QP++LGGT G +SLSFIHTYPEV  A+ + ED GL+F G+  SA   V +G GSGFNFRFFVQ+T W PGEL AEV  G W   +A KM+LLRVRDRKGPD AKPMW DL  MAG
Sbjct:  187 IQPIFLGGTLGSQSLSFIHTYPEVAQAEQVTED-GLFFGGDFKSAVHCVREGIGSGFNFRFFVQYTQWGPGELGAEVNAGRWHAVSAGKMSLLRVRDRKGPDTAKPMWTDLLTMAG 301          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A4D9D9B7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9B7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.960e-28
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
            +QP+ LGGT     +  +HTYPE+  A  +  D GL+F G   +A  +V +   S   F+FF+Q TLWAPGEL+ E+   +W PA  SK  +L+ R R+GP +AKP+W ++ ++ GG +L   +E Y
Sbjct:  188 IQPVHLGGTGESDGIFMVHTYPELERATQVTND-GLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREIEDKVWYPAQVSKDVILKNRGREGPKMAKPLWTEVLELMGGSFLEIKKELY 313          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: B7G772_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G772_PHATC)

HSP 1 Score: 95.5 bits (236), Expect = 1.350e-20
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGE---IDSASRMVSDGPGSGFNFRFFVQFTLWAPG-ELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
            +QPLW GG       L  +H  P V  A+PL  DEGLY+ G+      A   V+D   +GF+F+FFVQ T+W    EL+ E+  G W  A  SK  L + RDR G   AKP+W ++ ++ GG Y    +  Y
Sbjct:  256 IQPLWFGGVDNVSAGLDMLHQCPTVPDAEPL-SDEGLYWGGDPALAQDAMDEVTDKVLTGFDFKFFVQSTVWGSSKELQKEIDNGTWFTARVSKEVLFKSRDRMGTRRAKPLWTEVMELLGGKYKDTRDMLY 386          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A1E7FXR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FXR6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 9.570e-20
Identity = 50/133 (37.59%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPG-----SGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
            +QPLW GG       L  +H  P V  AQ + ED G+Y+ G+   A   + D P      SGF+F+FFVQ T+W+ G L+ EV   +W  A  S   L + RDR G   AKP+W ++  + G +Y    + FY
Sbjct:  194 IQPLWFGGIDSLSVGLDMLHLCPTVNDAQQITED-GMYWGGDPTQAQDAMED-PSLDRIYSGFDFKFFVQSTIWSSGVLQGEVDDNIWFQANVSNNVLFKSRDRMGTKKAKPLWTEILDLMGDEYSDITKRFY 324          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A1Z5J7Y0_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7Y0_FISSO)

HSP 1 Score: 92.4 bits (228), Expect = 1.490e-19
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDG----PGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
            +QPLW GG       L  +H  P V GA+ L ED GL++ G+   A   + D     P SGF+F+FFVQ T++APG+ E EV    +  A  S   + + RDR G   AKP+W ++ ++ GG Y     + Y
Sbjct:  224 IQPLWFGGVDSYSAGLEMVHLCPAVRGAKQLTED-GLFWGGDPTEAQDAMEDPSLERPMSGFDFKFFVQSTIFAPGQAEKEVASSTFFLANVSTDVIFKSRDRMGTKRAKPLWTEIMELMGGKYEATKNKLY 354          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A7S4AE40_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AE40_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.360e-18
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPG-----SGFNFRFFVQFTLWAP-GELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
            +QPLW GG       L  +H  P V  A  + ED  +Y+ G+   A   + D P      SGF+F+FFVQ T+W+  G L++EV   +W PA  S+  L + RDR G   AKP+WA++  + G  Y   ME FY
Sbjct:  308 IQPLWFGGIDSLSVGLDMLHLCPTVRDATKITEDN-VYWGGDPAQAQDAMED-PSLDRMYSGFDFKFFVQSTIWSNVGTLQSEVDDKIWFPAKVSQKILFKSRDRMGTKKAKPLWAEIMGLMGDKYSVVMENFY 439          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A448ZN63_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZN63_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.910e-17
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   19 LQPLWLGGTQG-DKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPG-----SGFNFRFFVQFTLWA-PGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFY 399
            +QPLW GG       L  +H  P V  A  + ED  +Y+ G+   A   + D P      SGF+F+FFVQ T+W+  G L++EV   +W PA  S+  + + RDR G   A+P+W ++  + G +Y   M+ FY
Sbjct:  295 IQPLWFGGIDSLSVGLDMLHLCPTVKDATKITEDN-VYWGGDPAQAQDAMED-PSLDRAYSGFDFKFFVQSTIWSNAGSLQSEVDDKIWFPAKVSQNIIFKSRDRMGTKKAQPLWTEIMGLMGDEYGEIMKNFY 426          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: W7TWF9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWF9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.060e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   19 LQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEV 249
            +QP+ LGGT     +  IHTYPE+  A  +  D GL+F G   +A  +V +   S   F+FF+Q TLWAPGEL+ E+
Sbjct:  188 IQPVHLGGTGESDGIFMIHTYPELERATQVTND-GLFFGGNYTAAQELVREQGASSSRFKFFIQQTLWAPGELKREI 263          
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Match: A0A271J8I3_9BACT (UPF0301 protein B1759_11175 n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A271J8I3_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 3.160e-10
Identity = 34/116 (29.31%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   28 LWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDSASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLRVRDRKGPDIAKPMWADLSQMAGGDY 375
            LW+GG    ++L ++H + ++ G+ P+LED  ++F G+ ++    ++ G       RFFV ++ W  G+L+AEV  G W       + L   RD    D    +W  + +  GG+Y
Sbjct:   63 LWMGGPVQPETLHYLHPFGDLDGSLPVLED--VFFGGDFETLRAAIAAGDLDPDRARFFVGYSGWGAGQLDAEVDEGAW-------IVLPGNRDLVFADGDDALWRQILRQLGGEY 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157250.3732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRT0_ECTSI3.330e-7077.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YZZ3_9STRA2.540e-4464.66Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4D9D9B7_9STRA6.960e-2840.94Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
B7G772_PHATC1.350e-2039.39Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FXR6_9STRA9.570e-2037.59Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A1Z5J7Y0_FISSO1.490e-1937.88Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S4AE40_9STRA2.360e-1838.81Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZN63_9STRA3.910e-1735.82Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
W7TWF9_9STRA1.060e-1144.16Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A271J8I3_9BACT3.160e-1029.31UPF0301 protein B1759_11175 n=2 Tax=Bacteroidetes/... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157250contigH-elongata_contig157250:649..1291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue1.1e-55
Seed eggNOG ortholog2880.D7FRT0
EggNOG free text desc.Uncharacterized ACR, COG1678
EggNOG OGs2C6NC@1,2S3NZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-25_000260.1
Exons2
Model size408
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.743031-CDS-H-elongata_contig157250:648..8461622929928.743031-CDS-H-elongata_contig157250:648..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157250 649..846 -
1691679211.710632-CDS-H-elongata_contig157250:648..8461691679211.710632-CDS-H-elongata_contig157250:648..846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157250 649..846 -
1622929928.7638052-CDS-H-elongata_contig157250:1081..12911622929928.7638052-CDS-H-elongata_contig157250:1081..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157250 1082..1291 -
1691679211.7242894-CDS-H-elongata_contig157250:1081..12911691679211.7242894-CDS-H-elongata_contig157250:1081..1291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157250 1082..1291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157250.3732.1prot_H-elongata_contig157250.3732.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157250 649..1291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157250.3732.1

>prot_H-elongata_contig157250.3732.1 ID=prot_H-elongata_contig157250.3732.1|Name=mRNA_H-elongata_contig157250.3732.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MFLPRALQPLWLGGTQGDKSLSFIHTYPEVVGAQPLLEDEGLYFAGEIDS
ASRMVSDGPGSGFNFRFFVQFTLWAPGELEAEVGRGLWRPAAASKMALLR
VRDRKGPDIAKPMWADLSQMAGGDYLRAMEEFYRR*
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mRNA from alignment at H-elongata_contig157250:649..1291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157250.3732.1 ID=mRNA_H-elongata_contig157250.3732.1|Name=mRNA_H-elongata_contig157250.3732.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=643bp|location=Sequence derived from alignment at H-elongata_contig157250:649..1291- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTACCCCGTGCACTGCAGCCGTTGTGGTTAGGGGGCACGCAGGG CGACAAGAGCTTGTCGTTCATCCACACCTACCCAGAGGTGGTGGGGGCAC AGCCGCTCCTGGAAGATGAAGGGCTGTACTTCGCAGGGGAAATCGATTCC GCCTCACGAATGGTCTCGGATGGACCAGGGTCGGGCTTCAACTTCCGCTT CTTCGTCCAGGTGCCGACACCCGACTTCCGAACCCTGCCTGCCTTGCACC ACACTTAGACTTTGGGCGCGAATTATATAACGCAGTGGTAGCGCGTTGAT TCCACTTGTTTCCATTTTTAGCGATAGCGACAATTTCGCAGCAGGTCACC GACTGCGATGTCCCTTCAGGGGGCATAGAGAGCTCCATGTCCGTTATCAG CCCTCACGTCCCAGACCCCGATCCACGCGCATTTCCGCTCTCCAGTTCAC TCTCTGGGCCCCGGGGGAGCTGGAAGCGGAGGTCGGGCGGGGGCTGTGGC GCCCTGCAGCTGCAAGCAAGATGGCCCTTCTACGGGTCCGGGATCGAAAG GGGCCGGATATTGCAAAGCCGATGTGGGCCGACCTCTCTCAGATGGCGGG CGGGGACTACCTCCGGGCGATGGAGGAGTTCTATCGCCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig157250:649..1291-

>mRNA_H-elongata_contig157250.3732.1 ID=mRNA_H-elongata_contig157250.3732.1|Name=mRNA_H-elongata_contig157250.3732.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig157250:649..1291- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTACCCCGTGCACTGCAGCCGTTGTGGTTAGGGGGCACGCAGGG
CGACAAGAGCTTGTCGTTCATCCACACCTACCCAGAGGTGGTGGGGGCAC
AGCCGCTCCTGGAAGATGAAGGGCTGTACTTCGCAGGGGAAATCGATTCC
GCCTCACGAATGGTCTCGGATGGACCAGGGTCGGGCTTCAACTTCCGCTT
CTTCGTCCAGATGTTCCTACCCCGTGCACTGCAGCCGTTGTGGTTAGGGG
GCACGCAGGGCGACAAGAGCTTGTCGTTCATCCACACCTACCCAGAGGTG
GTGGGGGCACAGCCGCTCCTGGAAGATGAAGGGCTGTACTTCGCAGGGGA
AATCGATTCCGCCTCACGAATGGTCTCGGATGGACCAGGGTCGGGCTTCA
ACTTCCGCTTCTTCGTCCAGTTCACTCTCTGGGCCCCGGGGGAGCTGGAA
GCGGAGGTCGGGCGGGGGCTGTGGCGCCCTGCAGCTGCAAGCAAGATGGC
CCTTCTACGGGTCCGGGATCGAAAGGGGCCGGATATTGCAAAGCCGATGT
GGGCCGACCTCTCTCAGATGGCGGGCGGGGACTACCTCCGGGCGATGGAG
GAGTTCTATCGCCGATGATTCACTCTCTGGGCCCCGGGGGAGCTGGAAGC
GGAGGTCGGGCGGGGGCTGTGGCGCCCTGCAGCTGCAAGCAAGATGGCCC
TTCTACGGGTCCGGGATCGAAAGGGGCCGGATATTGCAAAGCCGATGTGG
GCCGACCTCTCTCAGATGGCGGGCGGGGACTACCTCCGGGCGATGGAGGA
GTTCTATCGCCGATGA
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