mRNA_H-elongata_contig157245.3729.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig157245.3729.1
Unique NamemRNA_H-elongata_contig157245.3729.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig157245.3729.1 vs. uniprot
Match: A0A6H5K0G0_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-16
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 AGNWGDSTFKAETLVRPDILLAILRQGHRVLWTDVDMVWLGNPL 132
            AG WGD  FK ET+VRPDILL+I+ QG++VLWTDVD+VWLGNPL
Sbjct: 1286 AGQWGDEIFKHETVVRPDILLSIMAQGYKVLWTDVDIVWLGNPL 1329
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BLAST of mRNA_H-elongata_contig157245.3729.1 vs. uniprot
Match: D8LU02_ECTSI (Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU02_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.950e-13
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 AGNWGDSTFKAETLVRPDILLAILRQGHRVLWTDVDMVWLGNPL 132
            AG WGD+ FK +T+ RPDILL ILRQG++ L+TDVD+ WLGN L
Sbjct:  346 AGQWGDNIFKQQTVARPDILLPILRQGYKALYTDVDIFWLGNVL 389
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BLAST of mRNA_H-elongata_contig157245.3729.1 vs. uniprot
Match: D3BL64_POLPP (WD40 repeat-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL64_POLPP)

HSP 1 Score: 49.3 bits (116), Expect = 1.460e-5
Identity = 19/43 (44.19%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 AGNWGDSTFKAETLVRPDILLAILRQGHRVLWTDVDMVWLGNP 129
            A ++G+  F+A    +P ++L +L++G+ VLWTD D+VWLG P
Sbjct:  165 AESYGNVGFRAICNEKPLVVLDVLKRGYNVLWTDTDIVWLGEP 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig157245.3729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0G0_9PHAE1.480e-1675.00Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D8LU02_ECTSI4.950e-1365.91Xylosyltransferase, family GT77 n=1 Tax=Ectocarpus... [more]
D3BL64_POLPP1.460e-544.19WD40 repeat-containing protein n=1 Tax=Polysphondy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig157245contigH-elongata_contig157245:805..936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.7e-10
Seed eggNOG ortholog2880.D8LU02
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929928.479387-CDS-H-elongata_contig157245:804..9361622929928.479387-CDS-H-elongata_contig157245:804..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157245 805..936 +
1691679211.5476909-CDS-H-elongata_contig157245:804..9361691679211.5476909-CDS-H-elongata_contig157245:804..936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig157245 805..936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig157245.3729.1prot_H-elongata_contig157245.3729.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig157245 805..936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig157245.3729.1

>prot_H-elongata_contig157245.3729.1 ID=prot_H-elongata_contig157245.3729.1|Name=mRNA_H-elongata_contig157245.3729.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
AGNWGDSTFKAETLVRPDILLAILRQGHRVLWTDVDMVWLGNPL
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mRNA from alignment at H-elongata_contig157245:805..936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig157245.3729.1 ID=mRNA_H-elongata_contig157245.3729.1|Name=mRNA_H-elongata_contig157245.3729.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig157245:805..936+ (Himanthalia elongata Himel1 dioecious)
GCCGGAAACTGGGGAGACTCCACCTTCAAGGCGGAGACGTTGGTCCGGCC
CGACATCCTGCTGGCCATCCTAAGGCAGGGCCACAGGGTGCTTTGGACAG
ACGTGGATATGGTCTGGCTGGGGAACCCCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig157245:805..936+

>mRNA_H-elongata_contig157245.3729.1 ID=mRNA_H-elongata_contig157245.3729.1|Name=mRNA_H-elongata_contig157245.3729.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig157245:805..936+ (Himanthalia elongata Himel1 dioecious)
GCCGGAAACTGGGGAGACTCCACCTTCAAGGCGGAGACGTTGGTCCGGCC
CGACATCCTGCTGGCCATCCTAAGGCAGGGCCACAGGGTGCTTTGGACAG
ACGTGGATATGGTCTGGCTGGGGAACCCCTTGGCCGGAAACTGGGGAGAC
TCCACCTTCAAGGCGGAGACGTTGGTCCGGCCCGACATCCTGCTGGCCAT
CCTAAGGCAGGGCCACAGGGTGCTTTGGACAGACGTGGATATGGTCTGGC
TGGGGAACCCCTTG
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